Alternatives and similar repositories for netZooPy

Users that are interested in netZooPy are comparing it to the libraries listed below

• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 4 months ago
• netZoo / netZooM
  netZooM is a network biology package implemented in MATLAB.
  ☆29Updated 9 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆177Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆91Updated 2 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆45Updated 3 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆57Updated 7 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated 2 years ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆157Updated last week
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated last week
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated 2 years ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 4 years ago
• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 4 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆88Updated last year
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 3 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆78Updated last year
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 8 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 5 years ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆58Updated last week
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆117Updated 2 weeks ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆152Updated last week
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 11 months ago