Alternatives and similar repositories for netZooPy

Users that are interested in netZooPy are comparing it to the libraries listed below

• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 4 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆45Updated 3 months ago
• netZoo / netZooM
  netZooM is a network biology package implemented in MATLAB.
  ☆29Updated 9 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆157Updated last week
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 4 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆56Updated last week
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆57Updated 7 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆52Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆177Updated 2 years ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆50Updated 5 months ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆63Updated last year
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆91Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆60Updated last year
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 8 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 5 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆88Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated 2 weeks ago