Alternatives and similar repositories for netZooPy

Users that are interested in netZooPy are comparing it to the libraries listed below

• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• netZoo / netZooM
  netZooM is a network biology package implemented in MATLAB.
  ☆29Updated 7 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆175Updated 2 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆77Updated 2 months ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆153Updated this week
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆87Updated last month
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆53Updated 4 months ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated last month
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆57Updated this week
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆76Updated 10 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆63Updated last year
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 4 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 9 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆49Updated 2 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆107Updated 2 years ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 5 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆148Updated 11 months ago
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆114Updated 3 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆58Updated 4 months ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆146Updated this week
• baryshnikova-lab / safepy
  Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
  ☆45Updated 2 months ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated last year
• altoslabs / perturbench
  ☆59Updated last month