netZoo / netZooPyLinks
netZooPy is a network biology package implemented in Python.
☆90Updated 2 months ago
Alternatives and similar repositories for netZooPy
Users that are interested in netZooPy are comparing it to the libraries listed below
Sorting:
- netZooM is a network biology package implemented in MATLAB.☆28Updated 5 months ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last month
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 months ago
- ☆67Updated last year
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆151Updated last week
- netZooC is a network biology package implemented in C.☆26Updated 3 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- data and model repository for single-cell data☆135Updated last year
- Batch balanced KNN☆171Updated last year
- Unified knowledge-driven network inference from omics data☆81Updated last month
- spatial transcriptome, single cell☆69Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Prize-Collecting Steiner Forests for Interactomes☆61Updated last year
- ☆102Updated 2 years ago
- Python client for the OmniPath web service☆47Updated 2 months ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated 3 months ago
- netZooR is a network biology package implemented in R.☆112Updated last month
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆42Updated 3 weeks ago
- Notebooks used in scvi-tools tutorials☆55Updated this week
- Tabula Muris Senis☆105Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆88Updated 3 years ago
- ☆131Updated last year
- reverse gene expression score☆15Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Single-cell multi-omics integration using Optimal Transport☆46Updated last month