Alternatives and similar repositories for netZooPy

Users that are interested in netZooPy are comparing it to the libraries listed below

• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆152Updated last week
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆110Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated 2 weeks ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year
• Teichlab / bbknn
  Batch balanced KNN
  ☆172Updated 2 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆49Updated 3 months ago
• netZoo / netZooM
  netZooM is a network biology package implemented in MATLAB.
  ☆28Updated 5 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 4 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆85Updated 2 months ago
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆94Updated 4 years ago
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆105Updated 2 years ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆147Updated 10 months ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆62Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated 3 weeks ago
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated last week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆234Updated last year
• cantinilab / momix-notebook
  ☆67Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 11 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆47Updated this week
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆55Updated this week
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆60Updated last year