baryshnikova-lab / safepy

Related projects ⓘ

Alternatives and complementary repositories for safepy

• saeyslab / moduledetection-evaluation
  ☆31Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆133Updated 9 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆110Updated this week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆38Updated this week
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆86Updated 5 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated 3 weeks ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆83Updated 2 years ago
• shwhalen / targetfinder
  ☆83Updated 3 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆82Updated 2 months ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆56Updated 8 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆110Updated this week
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆36Updated 5 years ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆149Updated last year
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆86Updated 4 months ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated last year
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆55Updated 3 months ago
• brianpenghe / Bio-Jobs
  A list of positions (mostly biology-related) open to apply
  ☆32Updated 3 weeks ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆69Updated 6 months ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆177Updated 3 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆102Updated last year
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆38Updated last week
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆66Updated 4 months ago
• lilab-bcb / harmony-pytorch
  ☆49Updated 10 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆44Updated last year
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 8 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆101Updated 3 weeks ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆115Updated 2 years ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆124Updated 2 months ago