vahuynh / GENIE3Links
Machine learning-based approach for the inference of gene regulatory networks from expression data.
☆90Updated 4 years ago
Alternatives and similar repositories for GENIE3
Users that are interested in GENIE3 are comparing it to the libraries listed below
Sorting:
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆93Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆89Updated last year
- ☆131Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- R package to access DoRothEA's regulons☆151Updated last year
- Multi-omic velocity inference☆111Updated 11 months ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- ☆114Updated 4 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆80Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆68Updated 4 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- ☆33Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated this week
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last month
- Batch balanced KNN☆172Updated 2 years ago
- ☆66Updated 2 years ago
- This is the official repository for the Human Cell Atlas Heart project.☆30Updated 5 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- ☆94Updated 4 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- Network Reverse Engineering through AP inference of Mutual Information☆86Updated 2 years ago