kaustubhad / gwas-power
R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single-SNP single-trait) GWAS studies using linear regression models, i.e for quantitative traits.
☆18Updated 6 years ago
Related projects: ⓘ
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- Large scale ancestry inference from PCA data☆21Updated last year
- Sweep Inference Framework (controlling for correlation)☆28Updated 2 months ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 3 weeks ago
- Genome Analysis Workshop (Jena 2016) material☆17Updated 7 years ago
- Repository for pipeline code☆22Updated 6 months ago
- Scalable population structure inference☆17Updated last year
- GWAS QC, PCA, haplotype phasing, genotype imputation☆16Updated this week
- ☆22Updated 10 months ago
- ☆30Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 6 years ago
- Variational Inference of Polygenic Risk Scores☆19Updated 3 months ago
- ☆15Updated 6 years ago
- ☆19Updated 4 years ago
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆22Updated last year
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 3 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated 6 months ago
- ☆20Updated 5 months ago
- ☆21Updated 2 years ago
- ☆19Updated last year
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆13Updated last month
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 5 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated last week
- Recombination maps from Bhérer, C. et al. Nature Communications☆12Updated 7 years ago
- Statistical fine-mapping pipeline in FinnGen☆24Updated last week
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆29Updated 2 months ago
- Fork of ricopili for development of pipeline for family-based data☆17Updated last year
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated 11 months ago
- ☆14Updated last year