dgarrimar / mantaLinks
Non-parametric, asymptotic P-value computation for multivariate linear models
☆16Updated 2 years ago
Alternatives and similar repositories for manta
Users that are interested in manta are comparing it to the libraries listed below
Sorting:
- Generalized linear Mixed Model Association Tests☆44Updated 2 weeks ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated last week
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- Query the gene models of a given organism/assembly☆27Updated last month
- ☆13Updated 6 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Updated 6 months ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last week
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Cross-population fine-mapping☆40Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago