frankMusacchia / AnnocriptLinks
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portra…
☆56Updated 5 years ago
Alternatives and similar repositories for Annocript
Users that are interested in Annocript are comparing it to the libraries listed below
Sorting:
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Updated 9 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Python programs for processing GFF3 files☆102Updated last month
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- ☆35Updated 2 years ago
- Trinotate source code☆84Updated last year
- SURPI☆86Updated 9 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated last month
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 8 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated last week
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆77Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago