Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portra…
☆55May 11, 2020Updated 6 years ago
Alternatives and similar repositories for Annocript
Users that are interested in Annocript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trinotate source code☆85Mar 14, 2024Updated 2 years ago
- Annotate DNA sequences for Gene Ontology terms☆40Sep 11, 2025Updated 8 months ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- ☆26Oct 17, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆77Feb 11, 2022Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- Galaxy Wrappers and helpers for the MISA ttols☆11Oct 11, 2014Updated 11 years ago
- ☆23May 1, 2026Updated 3 weeks ago
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 3 years ago
- TransDecoder source☆304Mar 22, 2026Updated 2 months ago
- Error correction for Illumina RNA-seq reads☆67Jan 4, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- ☆11Mar 5, 2025Updated last year
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- ☆16Jul 7, 2025Updated 10 months ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆17Aug 12, 2021Updated 4 years ago
- ☆25Feb 24, 2026Updated 3 months ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- Assembly statistic visualisation☆96Dec 22, 2023Updated 2 years ago
- Uncovering the invisible impacts of your research.☆43Apr 5, 2012Updated 14 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆21Sep 4, 2020Updated 5 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆66Mar 22, 2021Updated 5 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 8 years ago
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 9 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆23Jul 22, 2023Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- ☆11Sep 16, 2021Updated 4 years ago