aaronkollasch / seqdesign-pytorchLinks
Protein design and variant prediction using autoregressive generative models
☆23Updated 2 years ago
Alternatives and similar repositories for seqdesign-pytorch
Users that are interested in seqdesign-pytorch are comparing it to the libraries listed below
Sorting:
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- ☆41Updated 6 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆49Updated 2 years ago
- An antibody-specific language model focusing on NGL prediction☆29Updated 10 months ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆40Updated last week
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated last month
- ☆23Updated 6 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆52Updated 6 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆23Updated 4 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 4 months ago
- ☆70Updated 3 months ago
- ☆35Updated 3 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆67Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated last year
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- Machine learning-driven antibody design☆60Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- The DSSP building software☆44Updated last year
- ☆25Updated 2 years ago
- ☆69Updated 4 years ago
- ☆58Updated 8 months ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆38Updated 3 months ago