aaronkollasch / seqdesign-pytorchLinks
Protein design and variant prediction using autoregressive generative models
☆23Updated 2 years ago
Alternatives and similar repositories for seqdesign-pytorch
Users that are interested in seqdesign-pytorch are comparing it to the libraries listed below
Sorting:
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆40Updated 4 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆68Updated last year
- An antibody-specific language model focusing on NGL prediction☆30Updated 11 months ago
- ☆23Updated 4 years ago
- pyFoldX: python bindings for FoldX.☆48Updated 3 years ago
- ☆43Updated 6 months ago
- ☆41Updated 4 months ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 2 months ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆27Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆43Updated 3 weeks ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- A structure checker in python☆22Updated 8 months ago
- ☆35Updated 3 years ago
- ☆23Updated 7 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- test☆14Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- The DSSP building software☆46Updated 2 years ago
- ☆70Updated 4 years ago
- dMaSIF implementation for google colab☆32Updated 2 years ago