Alternatives and similar repositories for seqdesign-pytorch

Users that are interested in seqdesign-pytorch are comparing it to the libraries listed below

• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆28Updated 2 years ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated last year
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆68Updated last year
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• csi-greifflab / developability_profiling
  ☆25Updated this week
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆60Updated 4 years ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆48Updated 4 years ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆38Updated 4 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• AbSciBio / igdesign
  ☆46Updated 7 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• Faezov / PDBrenum
  ☆30Updated 3 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated last month
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• stemylonas / DeepSurf
  A surface-based deep learning approach for the prediction of ligand binding sites on proteins
  ☆44Updated 2 years ago