aaronkollasch / seqdesign-pytorchLinks
Protein design and variant prediction using autoregressive generative models
☆24Updated 2 years ago
Alternatives and similar repositories for seqdesign-pytorch
Users that are interested in seqdesign-pytorch are comparing it to the libraries listed below
Sorting:
- ☆47Updated 11 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 3 years ago
- ☆23Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆26Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆59Updated 3 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- pyFoldX: python bindings for FoldX.☆53Updated 4 years ago
- Fragment binding prediction with ColabFold☆38Updated last month
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- dMaSIF implementation for google colab☆35Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ☆30Updated 6 months ago
- ☆35Updated 4 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Machine learning-driven antibody design☆62Updated 2 years ago
- ☆88Updated last year
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 5 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆71Updated last year
- The DSSP building software☆47Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago