mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that complements the available experimental data with large amounts of simulated data.
☆15May 24, 2018Updated 7 years ago
Alternatives and similar repositories for mgpfusion
Users that are interested in mgpfusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆40Apr 24, 2018Updated 7 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- Protein-Protein Docking using Genetic Algorithm☆20Mar 9, 2026Updated 2 weeks ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 7 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Gaussian process models for optimizing channelrhodopsin properties.☆13May 30, 2020Updated 5 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Jun 4, 2024Updated last year
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- p3d - python module for structural bioinformatics☆22Sep 18, 2018Updated 7 years ago
- Data and analysis scripts for understanding molecular entropies, including conformer flexibility☆12Mar 29, 2021Updated 5 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20May 22, 2019Updated 6 years ago
- ☆22Dec 15, 2022Updated 3 years ago
- Mol2vec notebooks for use with Binder service☆29Mar 24, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Mar 29, 2021Updated 5 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- Tool to compute molecular Solvent Excluded Surface meshes on the GPU using CUDA☆15Jun 8, 2024Updated last year
- Genetic algorithm to convert 3D-RISM solvent densities to explicit water molecules in binding pockets☆13Dec 19, 2017Updated 8 years ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 6 years ago
- ☆24Mar 29, 2021Updated 5 years ago
- Overview of published generative models that produce molecules☆15Jan 16, 2020Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Python package to manage protein structures and their annotations☆45Mar 18, 2026Updated last week
- A library for solving POMDPs☆11Apr 15, 2025Updated 11 months ago
- Tokenizing Loops of Antibodies☆25Nov 23, 2025Updated 4 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆41Jun 12, 2025Updated 9 months ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 5 years ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 5 years ago
- AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.☆11Nov 21, 2025Updated 4 months ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Dec 12, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆35Nov 4, 2021Updated 4 years ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- ☆12Nov 28, 2025Updated 4 months ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- ☆12Oct 21, 2018Updated 7 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆67Mar 9, 2026Updated 2 weeks ago
- ☆11Oct 23, 2025Updated 5 months ago