PDNET: A fully open-source framework for deep learning protein real-valued distances
☆36May 30, 2021Updated 4 years ago
Alternatives and similar repositories for pdnet
Users that are interested in pdnet are comparing it to the libraries listed below
Sorting:
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- ☆26May 9, 2022Updated 3 years ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆22Jan 27, 2022Updated 4 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Nov 17, 2025Updated 3 months ago
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Feb 2, 2026Updated 3 weeks ago
- ☆24Mar 29, 2021Updated 4 years ago
- ☆27Feb 16, 2022Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆16Sep 30, 2024Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Jan 8, 2024Updated 2 years ago
- pytorch implementation of trDesign☆44Mar 19, 2021Updated 4 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- Graph Inference on MoLEcular Topology☆26Mar 25, 2023Updated 2 years ago
- ☆31Aug 16, 2021Updated 4 years ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆17Jun 6, 2024Updated last year
- Implementation of GEFA: Early Fusion Approach in Drug-Target Affinity Prediction☆22Sep 30, 2020Updated 5 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Three-dimensional force fields fingerprints☆27Jan 11, 2022Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Mar 25, 2019Updated 6 years ago
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago
- Library that handles atom structures as XYZ files and properties derived from it.☆18Aug 5, 2025Updated 6 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Apr 26, 2024Updated last year
- Graph neural network for predicting NMR chemical shifts☆54May 6, 2022Updated 3 years ago
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆20Jan 8, 2020Updated 6 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Jul 28, 2022Updated 3 years ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 6 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 6 months ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆20Aug 2, 2022Updated 3 years ago
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- ☆12Aug 3, 2023Updated 2 years ago
- Screen interactions with AlphaFold Multimer☆13Mar 10, 2025Updated 11 months ago
- ☆34Jul 3, 2024Updated last year
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 2 years ago