chenxingqiang / alphafold2-docs

Related projects ⓘ

Alternatives and complementary repositories for alphafold2-docs

• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆51Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆34Updated 3 years ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆49Updated 2 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆45Updated last year
• jproney / AF2Rank
  ☆95Updated last year
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆36Updated 8 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆77Updated last year
• ELELAB / RosettaDDGPrediction
  ☆45Updated 9 months ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆30Updated 5 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆33Updated 4 years ago
• tommyhuangthu / UniDesign
  a universal framework for computational protein design
  ☆34Updated last year
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆38Updated 3 years ago
• idlutz / protein-backbone-MCTS
  ☆46Updated 4 months ago
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆79Updated 3 years ago
• Furman-Lab / PatchMAN
  ☆24Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆25Updated 9 months ago
• ba-lab / disteval
  DISTEVAL: A web-server for evaluating protein inter-residue distances
  ☆18Updated 2 years ago
• KeatingLab / PixelDB
  ☆13Updated 7 years ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆42Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆84Updated 3 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆75Updated last month
• aaronkollasch / seqdesign-pytorch
  Protein design and variant prediction using autoregressive generative models
  ☆22Updated last year
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆30Updated 2 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• Liuxg16 / GeoPPI
  ☆75Updated 2 years ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆19Updated 2 years ago