Alternatives and similar repositories for Python4Bioinformatics

Users that are interested in Python4Bioinformatics are comparing it to the libraries listed below

• TRON-Bioinformatics / covigator-ngs-pipeline
  A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…
  ☆19Updated last year
• kyclark / bioinformatics_primer
  Bioinformatics with Unix, bash, Make, Python, and parallel
  ☆22Updated 5 years ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆102Updated 6 years ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 3 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• nextflow-io / nf-hack17-tutorial
  Nextflow basic tutorial for newbie users
  ☆33Updated 7 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆59Updated 7 months ago
• GenomicsAotearoa / RNA-seq-workshop
  ☆19Updated last year
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆61Updated 5 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆59Updated 3 months ago
• bpucker / APPLS
  Applied Python Programming for Life Scientists
  ☆25Updated 4 years ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated 2 years ago
• sanger-pathogens / pathogen-informatics-training
  ☆74Updated 4 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆36Updated 2 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆53Updated this week
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• sschmeier / genomics
  Sphinx documentation source for a computational genomics tutorial.
  ☆34Updated 4 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 months ago
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆64Updated 3 years ago
• sestaton / HMMER2GO
  Annotate DNA sequences for Gene Ontology terms
  ☆42Updated 2 weeks ago
• danknights / mice8992-2016
  Code used in MiCE 8992 Spring 2016
  ☆43Updated 9 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆32Updated last week
• Psy-Fer / deeplexicon
  Signal based nanopore RNA demultiplexing with convolutional neural networks
  ☆38Updated last year
• griffithlab / rnaseq_tutorial_wiki
  The wiki repo, with pull request enabled, for the rnaseq_tutorial
  ☆26Updated 5 years ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆28Updated 2 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 4 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last week
• fls-bioinformatics-core / GFFUtils
  Python module and utility programs for working with GFF files
  ☆32Updated 4 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 3 weeks ago