jump-cellpainting / 2024_Chandrasekaran_NatureMethods
☆60Updated last month
Alternatives and similar repositories for 2024_Chandrasekaran_NatureMethods:
Users that are interested in 2024_Chandrasekaran_NatureMethods are comparing it to the libraries listed below
- Cell Painting Gallery☆79Updated this week
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆20Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 6 months ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆165Updated last month
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆59Updated 4 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated last month
- Label Free Prediction of Cell Painting from Brightfield Images☆26Updated 2 years ago
- Evaluating batch correction methods for image-based cell profiling☆12Updated 2 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆48Updated 8 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- Python package for processing image-based profiling data☆101Updated last week
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆21Updated last month
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Integrated pipeline for multiplexed image analysis☆84Updated this week
- ☆54Updated 2 years ago
- Morphological profiling using deep learning☆114Updated 5 months ago
- Cell Painting and other pipelines from the Imaging Platform☆17Updated last month
- External repo for the EFAAR benchmarking paper☆18Updated 2 weeks ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated 7 months ago
- CellProfiler tutorial pipelines and images☆93Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆72Updated 5 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆83Updated 2 months ago
- A deep-learning framework for multi-omics integration☆25Updated last year
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated last week