Alternatives and similar repositories for 2024_Chandrasekaran_NatureMethods:

Users that are interested in 2024_Chandrasekaran_NatureMethods are comparing it to the libraries listed below

• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆20Updated last month
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆75Updated this week
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆19Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 5 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆50Updated 11 months ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆52Updated 3 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆112Updated 4 months ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆165Updated this week
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated 3 weeks ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆60Updated last year
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆34Updated 2 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆87Updated 2 weeks ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated last year
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 2 weeks ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆80Updated 3 months ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆26Updated 2 years ago
• uhlerlab / cross-modal-autoencoders
  ☆54Updated 2 years ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆47Updated 7 months ago
• snap-stanford / stellar
  ☆64Updated 2 years ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆11Updated last month
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆17Updated this week
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆70Updated last year
• KerenLab / CellSighter
  ☆30Updated last year
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• gevaertlab / RNA-GAN
  Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
  ☆15Updated last year
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆69Updated 3 months ago
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆14Updated 6 months ago
• daviddaiweizhang / istar
  ☆114Updated last month