jump-cellpainting / 2024_Chandrasekaran_NatureMethods

Related projects: ⓘ

• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆18Updated 5 months ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆62Updated 3 weeks ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆73Updated this week
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆43Updated 6 months ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆24Updated 2 years ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆18Updated last year
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆94Updated 3 years ago
• uhlerlab / cross-modal-autoencoders
  ☆52Updated last year
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 4 years ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆30Updated 2 years ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆19Updated 2 years ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆18Updated last week
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆154Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated last year
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆41Updated 2 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆22Updated 4 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆102Updated last month
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆53Updated 11 months ago
• AllenCell / aics-ml-segmentation
  ☆29Updated 2 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆73Updated 7 months ago
• snap-stanford / stellar
  ☆60Updated last year
• daviddaiweizhang / istar
  ☆83Updated 4 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated last year
• biomed-AI / Hist2ST
  ☆32Updated 2 years ago
• mahmoodlab / HEST
  HEST: Bringing Spatial Transcriptomics and Histopathology together
  ☆123Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆76Updated this week
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆11Updated last month
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆62Updated last year
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆81Updated last week
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆72Updated 3 weeks ago