bunnelab / virtuesLinks
A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical diagnostics, biological discovery and patient case retrieval.
☆31Updated 4 months ago
Alternatives and similar repositories for virtues
Users that are interested in virtues are comparing it to the libraries listed below
Sorting:
- ☆63Updated 4 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆60Updated 2 weeks ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆78Updated 8 months ago
- Foundation Model for Multiplex Spatial Proteomic Images☆59Updated 2 weeks ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆94Updated 3 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆31Updated 2 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆285Updated last month
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆138Updated 7 months ago
- Her2 Breast Cancer Project☆79Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆49Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆173Updated this week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆51Updated 11 months ago
- ☆60Updated 3 weeks ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated 10 months ago
- ☆55Updated 2 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated this week
- Accessible and interoperable whole slide image analysis☆94Updated last week
- ☆70Updated last month
- comseg☆21Updated 4 months ago
- Cell Painting Gallery☆93Updated last week
- External repo for the EFAAR benchmarking paper☆20Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆197Updated 3 months ago
- ☆101Updated 4 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Deep learning on histopathology images.☆124Updated 3 years ago
- Code for the THItoGene☆24Updated 2 months ago
- A model developed for the generation of scRNA-seq data☆66Updated 4 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 2 years ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆15Updated 3 months ago