Alternatives and similar repositories for virtues

Users that are interested in virtues are comparing it to the libraries listed below

• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆69Updated 10 months ago
• ratschlab / HistoPlexer
  ☆27Updated 9 months ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆70Updated 7 months ago
• mahmoodlab / HEST
  Integrating histology and spatial transcriptomics - NeurIPS 2024
  ☆348Updated this week
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆83Updated last year
• owkin / histoplus
  ☆57Updated 4 months ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆60Updated last year
• bioptimus / releases
  ☆109Updated last year
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆140Updated 4 years ago
• SichenZhu / Stem
  [ICLR 2025] Stem: Gene Expression Inference from Histology Images
  ☆43Updated 8 months ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆118Updated this week
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆173Updated this week
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆16Updated 6 months ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆92Updated 3 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 5 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆25Updated this week
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆25Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆155Updated last year
• Weiqin-Zhao / Hist2Cell
  ☆18Updated last month
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆63Updated 2 weeks ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆181Updated this week
• GuangyuWangLab2021 / Loki
  A visual–omics foundation model to bridge histopathology with spatial transcriptomics
  ☆123Updated 7 months ago
• HistAI / SPIDER
  SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …
  ☆40Updated 9 months ago
• AstraZeneca / ibd-interpret
  We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…
  ☆16Updated 2 years ago
• Sanofi-Public / MIPHEI-ViT
  MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models
  ☆25Updated last month
• bowang-lab / scGPT-spatial
  ☆121Updated 10 months ago
• AIMLab-UBC / VOLTA
  ☆13Updated last year
• zhangxiaoyu11 / OmiEmbed
  Multi-task deep learning framework for multi-omics data analysis
  ☆49Updated 3 years ago
• biomed-AI / Hist2ST
  ☆52Updated 3 years ago