Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
☆83Oct 22, 2024Updated last year
Alternatives and similar repositories for BLEEP
Users that are interested in BLEEP are comparing it to the libraries listed below
Sorting:
- ☆48May 19, 2025Updated 9 months ago
- PyTorch implementation of HisToGene☆52Nov 30, 2021Updated 4 years ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆15May 19, 2025Updated 9 months ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆19Oct 20, 2023Updated 2 years ago
- ☆53Apr 26, 2022Updated 3 years ago
- Her2 Breast Cancer Project☆97Nov 27, 2022Updated 3 years ago
- ☆14May 28, 2025Updated 9 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆367Feb 8, 2026Updated 3 weeks ago
- ☆160Dec 20, 2024Updated last year
- Deep learning on histopathology images.☆142Sep 8, 2021Updated 4 years ago
- ☆13Feb 24, 2025Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Jan 10, 2025Updated last year
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆27Jan 24, 2026Updated last month
- ☆79May 13, 2025Updated 9 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆113Oct 15, 2024Updated last year
- Hierarchical Deep Multiple Instance Learning☆11Jun 30, 2023Updated 2 years ago
- [AAAI 2025] M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images☆14Dec 1, 2025Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆47Apr 15, 2025Updated 10 months ago
- ☆30Mar 15, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77May 24, 2024Updated last year
- ☆30Aug 18, 2023Updated 2 years ago
- ☆350Mar 29, 2025Updated 11 months ago
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated 11 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆234Feb 7, 2023Updated 3 years ago
- Code for the THItoGene☆28Apr 9, 2025Updated 10 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆147Feb 22, 2025Updated last year
- ☆16Oct 1, 2023Updated 2 years ago
- ☆391Nov 23, 2025Updated 3 months ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆63Feb 4, 2026Updated 3 weeks ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆615Mar 19, 2024Updated last year
- Pathology Foundation Model - Nature Medicine☆677Mar 26, 2025Updated 11 months ago
- Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data☆576May 16, 2025Updated 9 months ago
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆109Dec 16, 2025Updated 2 months ago
- Identify spatial domain☆89May 29, 2025Updated 9 months ago
- ☆30Jul 18, 2025Updated 7 months ago
- [ICLR 2024]Implementation of "Prototypical Information Bottlenecking and Disentangling for Multimodal Cancer Survival Prediction"☆78May 5, 2024Updated last year
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆117Jun 19, 2023Updated 2 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago