bowang-lab / BLEEPLinks
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
☆83Updated last year
Alternatives and similar repositories for BLEEP
Users that are interested in BLEEP are comparing it to the libraries listed below
Sorting:
- Her2 Breast Cancer Project☆92Updated 3 years ago
- PyTorch implementation of HisToGene☆52Updated 4 years ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆123Updated 7 months ago
- ☆53Updated 3 years ago
- Deep learning on histopathology images.☆140Updated 4 years ago
- ☆78Updated 8 months ago
- ☆50Updated 9 months ago
- ☆28Updated 9 months ago
- ☆18Updated last month
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆348Updated last week
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆43Updated 9 months ago
- ☆59Updated 3 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- ☆157Updated last year
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Updated 9 months ago
- Code for the THItoGene☆28Updated 9 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Updated last year
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆26Updated last month
- Code for ST_IGI package☆34Updated 6 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆114Updated last year
- ☆44Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆35Updated 5 months ago
- ☆14Updated 7 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆39Updated last year
- ☆13Updated 10 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Updated last year
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Updated 9 months ago
- GrandQC tool for tissue detection and quality control in pathology☆76Updated 2 weeks ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆18Updated 2 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆46Updated 7 months ago