bowang-lab / BLEEPLinks
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
☆80Updated 11 months ago
Alternatives and similar repositories for BLEEP
Users that are interested in BLEEP are comparing it to the libraries listed below
Sorting:
- Her2 Breast Cancer Project☆87Updated 2 years ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- ☆100Updated 4 months ago
- Deep learning on histopathology images.☆130Updated 4 years ago
- ☆74Updated 4 months ago
- ☆46Updated 3 years ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆313Updated last month
- ☆43Updated 6 months ago
- ☆15Updated 2 months ago
- ☆142Updated 9 months ago
- ☆22Updated 6 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆38Updated 5 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 5 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Updated 6 months ago
- Code for the THItoGene☆24Updated 5 months ago
- ☆30Updated 2 weeks ago
- Train a model to predict gene expression from histology slides.☆107Updated 3 years ago
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆19Updated 2 months ago
- ☆44Updated 9 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆43Updated 9 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Updated 8 months ago
- A generative toolkit to translate H&E images to multiplexed IHC☆53Updated 9 months ago
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆36Updated 9 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- GrandQC tool for tissue detection and quality control in pathology☆65Updated 6 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆22Updated last year
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆108Updated 11 months ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆17Updated last year