Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
☆90Oct 22, 2024Updated last year
Alternatives and similar repositories for BLEEP
Users that are interested in BLEEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyTorch implementation of HisToGene☆58Nov 30, 2021Updated 4 years ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- ☆53May 19, 2025Updated last year
- ☆63Apr 26, 2022Updated 4 years ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆21Oct 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning on histopathology images.☆149Sep 8, 2021Updated 5 years ago
- ☆37Jul 18, 2025Updated last year
- Her2 Breast Cancer Project☆110Nov 27, 2022Updated 3 years ago
- ☆14May 28, 2025Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆442Apr 16, 2026Updated 5 months ago
- ☆175Dec 20, 2024Updated last year
- ☆13Feb 24, 2025Updated last year
- ☆22Feb 5, 2025Updated last year
- ☆91Jun 2, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆74Sep 16, 2025Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆55Apr 15, 2025Updated last year
- ☆32Mar 15, 2024Updated 2 years ago
- [AAAI 2025] M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images☆14Dec 1, 2025Updated 10 months ago
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆23Jun 3, 2026Updated 4 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆38Aug 11, 2025Updated last year
- Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics☆24Jun 28, 2025Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- Hierarchical Deep Multiple Instance Learning☆13Jun 30, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆151Jun 3, 2025Updated last year
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆118Oct 15, 2024Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago
- Awesome generative spatial omics tools☆35Jul 17, 2026Updated 2 months ago
- Pathology Foundation Model - Nature Medicine☆785Mar 26, 2025Updated last year
- [PR 2025] Code for UMPIRE☆14Mar 10, 2025Updated last year
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 5 months ago
- ☆15Apr 17, 2026Updated 5 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆363Mar 29, 2025Updated last year
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆121Dec 16, 2025Updated 9 months ago
- ☆16Oct 1, 2023Updated 3 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆252Feb 7, 2023Updated 3 years ago
- Code for the THItoGene☆31Apr 9, 2025Updated last year
- ☆142Feb 13, 2025Updated last year
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year