julienrichardalbert / MEA
☆9Updated 4 years ago
Related projects: ⓘ
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆9Updated 9 months ago
- ☆23Updated 3 years ago
- Merge fastq files split over lanes☆18Updated 6 years ago
- Detection of differential translated genes using Ribo-seq☆13Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- iread☆23Updated 3 years ago
- R package for DNA methylation analysis☆17Updated last month
- ☆17Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 5 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- ☆14Updated 2 years ago
- simplified cellranger for long-read data☆15Updated 2 months ago
- interactive plots for differential expression analysis☆25Updated 2 weeks ago
- HOT regions paper☆11Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated 8 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- R package wrapping bedtools☆37Updated 3 weeks ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆14Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆9Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆21Updated last year
- Snakemake pipeline for running MAJIQ☆15Updated 8 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆15Updated 8 months ago
- ☆17Updated 2 months ago