MalteThodberg / awesome-multitrait-gwasLinks
List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
☆31Updated 4 months ago
Alternatives and similar repositories for awesome-multitrait-gwas
Users that are interested in awesome-multitrait-gwas are comparing it to the libraries listed below
Sorting:
- ☆48Updated 3 months ago
- ☆36Updated 4 years ago
- ☆82Updated last month
- ☆35Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated last year
- Colocalization analysis of genetic association signals☆52Updated 2 months ago
- causal TWAS (cTWAS)☆45Updated last week
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- ☆33Updated last year
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 weeks ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 6 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- ☆41Updated 7 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆47Updated 2 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆67Updated 10 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆84Updated last year
- Code for implementing Mendelian randomization investigations☆18Updated 9 years ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- FLAMES: Accurate gene prioritization in GWAS loci☆41Updated 5 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago