luoyunan / ECNetLinks
An evolutionary context-integrated deep learning framework for protein engineering
☆70Updated 3 years ago
Alternatives and similar repositories for ECNet
Users that are interested in ECNet are comparing it to the libraries listed below
Sorting:
- ☆76Updated 4 years ago
- ☆91Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆41Updated 2 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆70Updated 5 months ago
- ☆116Updated 3 years ago
- ☆74Updated 5 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆82Updated 2 years ago
- Official repository of EnzymeFlow☆98Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆76Updated 5 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- open source repository☆145Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- Generative Language Modeling for Antibody Design☆180Updated last year
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 5 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated 2 months ago
- Official Implementation of IgGM☆179Updated 2 months ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆71Updated 10 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ☆108Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆57Updated 6 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Updated last year
- ☆77Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆76Updated 3 years ago
- Dataset and package for working with protein-protein interactions in 3D☆104Updated 9 months ago