Alternatives and similar repositories for openprotein-python

Users that are interested in openprotein-python are comparing it to the libraries listed below

• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆107Updated 2 months ago
• AbSciBio / igdesign
  ☆47Updated 11 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 8 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 weeks ago
• Exscientia / abodybuilder3
  ☆72Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆86Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆108Updated 4 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆58Updated last month
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 3 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆31Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆47Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• piercelab / tcrmodel2
  ☆45Updated 8 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆60Updated last week
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 3 weeks ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆73Updated 4 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 4 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆52Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated last month
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆62Updated 2 years ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆21Updated 2 years ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆85Updated 6 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆119Updated this week
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆42Updated 11 months ago