Alternatives and similar repositories for openprotein-python

Users that are interested in openprotein-python are comparing it to the libraries listed below

• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆88Updated last year
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 9 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 4 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆114Updated 5 months ago
• Exscientia / abodybuilder3
  ☆74Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆47Updated 2 years ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆120Updated last week
• AbSciBio / igdesign
  ☆47Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last month
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated 2 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated 2 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 10 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆69Updated 5 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆59Updated last year
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆77Updated 2 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆61Updated last week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated last month
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 2 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆53Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆37Updated this week
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆34Updated last year
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆53Updated 4 years ago
• AlexanderKroll / ESP
  ☆77Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆74Updated 4 years ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆111Updated 2 weeks ago