Alternatives and similar repositories for Alien:

Users that are interested in Alien are comparing it to the libraries listed below

• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆26Updated 7 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆54Updated last year
• Fleishman-Lab / CUMAb
  ☆19Updated 10 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆45Updated 4 months ago
• btbpanda / CAFA5-protein-function-prediction-2nd-place
  ☆10Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆33Updated 2 years ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆27Updated 3 weeks ago
• johnnytam100 / pdb2uniprot
  A Python script to map PDB ID + chain ID to UniProt ID.
  ☆16Updated last year
• piercelab / tcrmodel2
  ☆39Updated 2 weeks ago
• csi-greifflab / developability_profiling
  ☆21Updated 3 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆62Updated 2 weeks ago
• AbSciBio / igdesign
  ☆37Updated 3 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆28Updated 2 weeks ago
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆20Updated 5 months ago
• yjcyxky / antibody-dl
  A Collection of Platform, Tools, and Resources for Antibody Engineering
  ☆15Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated last week
• kadiliissaar / DeePhase
  DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…
  ☆16Updated 3 years ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆25Updated 9 months ago
• molML / peptidy
  The official codebase of peptidy, a peptide processing tool for machine learning.
  ☆30Updated 3 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆51Updated 8 months ago
• kevinmicha / ANTIPASTI
  ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…
  ☆25Updated 5 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆24Updated 3 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆25Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆38Updated last year
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆36Updated 11 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆54Updated 3 weeks ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 5 months ago