Molecular dynamics workflow framework in python.
☆12Nov 15, 2022Updated 3 years ago
Alternatives and similar repositories for MD_workflow_py
Users that are interested in MD_workflow_py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Using Gomacs from IPython notebook☆20Apr 8, 2014Updated 12 years ago
- A python framework to run adaptive Markov state model (MSM) simulation on HPC resources☆17Aug 1, 2025Updated 10 months ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- Python script that creates 2D protein-ligand interaction images☆13Apr 23, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jun 8, 2018Updated 8 years ago
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆17Mar 6, 2026Updated 3 months ago
- GNNs for predicting solubility of molecules in organic solvents using PyTorch and DGL☆14Jul 28, 2022Updated 3 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Nov 7, 2023Updated 2 years ago
- R package for simulation of caffeine concentration <doi:10.12793/tcp.2017.25.3.141>. https://asancpt.github.io/caffsim☆10Aug 26, 2020Updated 5 years ago
- This program computes the sum-frequency generation (SFG) spectrum for a give MD trajectory of interfacial water molecules. The program ca…☆13Jul 24, 2023Updated 2 years ago
- ☆15Nov 7, 2022Updated 3 years ago
- A repository for tutorials and FAQ's about LigParGen☆25Aug 12, 2018Updated 7 years ago
- FreeSASA Python Module☆60May 31, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PINY cleanup and new feature integration.☆13Dec 9, 2016Updated 9 years ago
- Handlebars helper, alternative to built-in partials. Similar to handlebars-helper-partial, but this helper will allow wildcard (glob) pat…☆16Nov 10, 2014Updated 11 years ago
- Python wrapper for packmol molecule packing program☆12Jan 4, 2016Updated 10 years ago
- Code Repo☆19Feb 12, 2017Updated 9 years ago
- Tools to make git easier to use and to avoid the learning curve☆21Apr 3, 2019Updated 7 years ago
- Parkinson disease is associated with movement disorder symptoms, such as tremor, rigidity, bradykinesia, and postural instability. The ma…☆13Dec 19, 2019Updated 6 years ago
- An open source project built with Streamlit on Python, that focuses on curating awesome resources for learning awesome skills.☆14Jun 16, 2024Updated 2 years ago
- Analysing trajectories with chemfiles☆13Jan 6, 2023Updated 3 years ago
- Code for "De novo molecular design with chemical language models"☆13Nov 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Repo that groups utility functions for e.g. plotting of Conformal prediction metrics☆17Feb 2, 2024Updated 2 years ago
- Gromacs Implementation of OPLS-AAM Force field☆15Aug 5, 2018Updated 7 years ago
- Classical molecular dynamics proxy application.☆31Jun 29, 2020Updated 6 years ago
- a Python library and CLI for the molecular dynamics simulation package Q☆21Nov 29, 2023Updated 2 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- Implementing OPLS-AA/M Force field in OpenMM from CHARMM formatted parameter files☆16Oct 21, 2015Updated 10 years ago
- Webpay is an implementation of the WebPaymentProvider spec☆42Mar 25, 2016Updated 10 years ago
- Wrap Python functions and shell commands as content-addressed transformations. Cache results, run them locally or on a cluster, and share…☆24Jun 22, 2026Updated last week
- Python tutorial for estimating and clustering free energy landscapes with InfleCS.☆31May 6, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Adaptive string method implementation in AmberTools23 and Amber22☆15Jan 7, 2025Updated last year
- MDplot: Visualise Molecular Dynamics☆31Mar 23, 2022Updated 4 years ago
- A plugin for repo2docker that outputs a directory with a shell-script and required files☆13Jun 24, 2025Updated last year
- Simultaneous Perturbation Stochastic Approximation for Feature Selection and Ranking☆14Oct 22, 2022Updated 3 years ago
- Support for multiple broker hosts and basic "failover" on the client side.☆23Feb 20, 2013Updated 13 years ago
- An unfinished interactive Awk tutorial using Jupyter notebooks☆21Jan 27, 2016Updated 10 years ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 4 years ago