melomcr / dynetan_tutorialLinks
A collection of tutorials for the python implementation of Dynamical Network Analysis
☆14Updated 3 months ago
Alternatives and similar repositories for dynetan_tutorial
Users that are interested in dynetan_tutorial are comparing it to the libraries listed below
Sorting:
- Python implementation of Dynamical Network Analysis☆15Updated 3 months ago
- ☆69Updated last year
- Force Fields☆66Updated 9 months ago
- ☆14Updated 11 months ago
- ☆34Updated last year
- The public versio☆67Updated 2 years ago
- Convert coarse-grained protein structure to all-atom model☆46Updated 5 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last month
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆88Updated 4 months ago
- rid☆21Updated 4 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆40Updated last year
- ☆18Updated 7 months ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- ☆30Updated 2 years ago
- ☆58Updated 2 years ago
- An efficient approach to RMSD-Based HDBSCAN Clustering of long Molecular Dynamics☆16Updated 3 years ago
- ☆76Updated 3 weeks ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated last month
- ☆68Updated 2 years ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆131Updated last week
- An application for configuring and running simulations with OpenMM☆75Updated 2 weeks ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆45Updated last month
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆90Updated 9 months ago
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆15Updated last month
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆52Updated 5 months ago
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆24Updated last week
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆68Updated 2 years ago
- The official repository of Uni-pKa☆84Updated 7 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆24Updated last year
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆79Updated 2 years ago