A collection of tutorials for the python implementation of Dynamical Network Analysis
☆15Aug 6, 2025Updated 10 months ago
Alternatives and similar repositories for dynetan_tutorial
Users that are interested in dynetan_tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation of Dynamical Network Analysis☆16Aug 6, 2025Updated 10 months ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆15Jan 23, 2026Updated 4 months ago
- DyNoPy☆11Sep 5, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆30May 28, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Neural relational inference for molecular dynamics simulations☆61May 30, 2023Updated 3 years ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆34May 16, 2025Updated last year
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆17Mar 6, 2026Updated 3 months ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year
- MDANCE: Hyper-efficient tools to process molecular dynamics simulations.☆145May 8, 2026Updated last month
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆36May 11, 2026Updated last month
- ☆69Apr 8, 2025Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆36Oct 14, 2024Updated last year
- Python framework for multi-parameter optimization and evaluation of protein folding models☆18Apr 12, 2021Updated 5 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆31Jan 8, 2024Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- Lectures for the SC3260 HPC course at Vanderbilt☆20May 5, 2020Updated 6 years ago
- ☆18Jan 19, 2026Updated 4 months ago
- ☆11Apr 16, 2021Updated 5 years ago
- ☆22May 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆23Jul 14, 2023Updated 2 years ago
- Virtual screening approach for fragments selection and merging to lead-like compounds☆13Aug 20, 2021Updated 4 years ago
- Python framework for doing ancestral sequence reconstruction☆43Mar 20, 2026Updated 2 months ago
- Machine learning prediction of enzyme optimum pH☆55Apr 29, 2025Updated last year
- A repository of the analysis and simulation tools for biomolecular modeling, simulations and drug discovery☆13Mar 7, 2025Updated last year
- NAMD QM/MM Tutorial on Free Energy Profile of Reaction Mechanisms☆15Sep 14, 2018Updated 7 years ago
- Python Rapid Artificial Intelligence Ab Initio Molecular Dynamics☆26Aug 26, 2022Updated 3 years ago
- A lightweight package with the periodic table of the elements☆12Apr 1, 2021Updated 5 years ago
- ☆82Aug 26, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆94Apr 21, 2026Updated last month
- ☆43Jun 12, 2025Updated last year
- Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz☆19Jun 14, 2024Updated last year
- Analyze correlated motions in MD trajectories with only a few lines of Python.☆33Jan 17, 2018Updated 8 years ago
- Repository for material from the 2020 MC/MD Summer Workshop☆14Jul 12, 2024Updated last year
- ☆17Jan 5, 2024Updated 2 years ago
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 3 years ago