Alternatives and similar repositories for pangenome-evaluation:

Users that are interested in pangenome-evaluation are comparing it to the libraries listed below

• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 7 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• chfi / gfainject
  ☆15Updated last year
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 3 weeks ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 10 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 weeks ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 4 years ago
• davidebolo1993 / cosigt
  ☆17Updated last week
• morispi / LRez
  Standalone tool and library allowing to work with barcoded linked-reads
  ☆12Updated 5 months ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated last month
• MoinSebi / gfa2bin
  ☆19Updated 5 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆19Updated last week
• ldenti / palss
  ☆21Updated 3 weeks ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆39Updated 6 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆14Updated 2 years ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 months ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆9Updated 6 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year