jeammimi / deepnanoLinks
☆22Updated 6 years ago
Alternatives and similar repositories for deepnano
Users that are interested in deepnano are comparing it to the libraries listed below
Sorting:
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- MeShClust: an intelligent tool for clustering DNA sequences☆38Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 5 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 6 months ago
- GBWT-based handle graph☆31Updated 3 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Fast5 API provided by ONT Research☆22Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 7 years ago
- ☆57Updated 4 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- CRyPTIC data processing pipelines☆34Updated 11 months ago
- Tools for querying and analysis of genomic data☆27Updated 7 months ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year