simon-anders / htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
☆124Updated 5 years ago
Alternatives and similar repositories for htseq:
Users that are interested in htseq are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 5 months ago
- Application for making ENCODE Blacklists☆296Updated 3 years ago
- AQUAS TF and histone ChIP-seq pipeline☆108Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- VarDict☆197Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆324Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆244Updated 4 months ago
- Detecting sites of genomic enrichment☆189Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆239Updated 5 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆317Updated 3 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆213Updated 10 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆251Updated last year
- Web application to explore the Sequence Read Archive.☆215Updated 2 weeks ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆160Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated 2 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆208Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 7 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆144Updated this week
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- ☆148Updated 2 years ago
- A tool for bigWig files.☆120Updated 6 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆273Updated 9 months ago