A Swiss army knife for genome projects
☆15Aug 13, 2013Updated 12 years ago
Alternatives and similar repositories for genomer
Users that are interested in genomer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 5 years ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Curated collection of open-source bioinformatics tools☆27Feb 5, 2019Updated 7 years ago
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Apr 6, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 9 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- Little sequence file utilities meant to work within Unix pipelines☆36Jan 20, 2015Updated 11 years ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year