yiq / SubcloneSeekerLinks
Computational Framework to reconstructing tumor clone structures
☆15Updated 4 years ago
Alternatives and similar repositories for SubcloneSeeker
Users that are interested in SubcloneSeeker are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated 8 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- ☆29Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago