yiq / SubcloneSeekerLinks
Computational Framework to reconstructing tumor clone structures
☆15Updated 4 years ago
Alternatives and similar repositories for SubcloneSeeker
Users that are interested in SubcloneSeeker are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 8 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆42Updated 9 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated 2 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- ☆29Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- DriverPower☆26Updated last year
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 6 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Analysis from kallisto paper☆32Updated 10 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago