filippocastelli / pyometiffLinks
OME-TIFF IO in python
☆26Updated 10 months ago
Alternatives and similar repositories for pyometiff
Users that are interested in pyometiff are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated this week
- High quality visualization for volumetric image data☆56Updated this week
- Command-line client for Fractal☆48Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- ☆41Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Cookiecutter for napari plugins☆71Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Discover, install, and share napari plugins☆54Updated 2 weeks ago
- GPU-accelerated image processing for everyone☆55Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆153Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Tool for segmentation in bioimaging☆35Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated last month
- native Python dataclasses for the OME data model☆65Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- GPU-accelerated Image Processing library for Python☆53Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Linking napari layers with Matplotlib plots☆43Updated last week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 10 months ago
- Python image segmentation plugin☆31Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 11 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago