filippocastelli / pyometiffLinks
OME-TIFF IO in python
☆23Updated 4 months ago
Alternatives and similar repositories for pyometiff
Users that are interested in pyometiff are comparing it to the libraries listed below
Sorting:
- ☆49Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated this week
- Discover, install, and share napari plugins☆52Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Command-line client for Fractal☆46Updated this week
- ☆37Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆41Updated 3 weeks ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 4 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 7 months ago
- Cookiecutter for napari plugins☆69Updated 9 months ago
- Tool for segmentation in bioimaging☆35Updated this week
- GPU-accelerated Image Processing library for Python☆51Updated this week
- A 3D interactivity toolbox for napari☆37Updated last month
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated 2 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆85Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 5 months ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- ☆22Updated 2 years ago
- Python image segmentation plugin☆31Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 3 months ago