AllenCellModeling / czifileLinks
czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
☆15Updated last month
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below
Sorting:
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 8 months ago
- Advanced Tool for Labeling And Segmentation☆39Updated last year
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆86Updated last week
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆18Updated 5 years ago
- Easily read and write ome-tiff images in python☆28Updated last year
- ☆32Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Discover, install, and share napari plugins☆54Updated last month
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Read and write life sciences file formats☆142Updated 5 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 7 months ago
- High quality visualization for volumetric image data☆53Updated last week
- 3D virtual staining with 2D and 2.5D U-Nets☆31Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- GPU-accelerated Image Processing library for Python☆52Updated this week
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Python image segmentation plugin☆31Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year