AllenCellModeling / czifile
czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
☆15Updated 6 years ago
Alternatives and similar repositories for czifile:
Users that are interested in czifile are comparing it to the libraries listed below
- Easily read and write ome-tiff images in python☆26Updated 8 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆53Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- ☆30Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆28Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆28Updated 3 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆61Updated 3 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 3 months ago
- Process images using SimpleITK in napari☆19Updated 3 months ago
- StarDist plugin for napari☆36Updated 4 months ago
- MorphoFeatures code and data☆18Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- Tools for distributed alignment of massive images☆78Updated this week
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 2 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 4 months ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆36Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆81Updated last month
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- ☆12Updated 4 years ago
- GPU-accelerated Image Processing library using OpenCL☆33Updated this week
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated this week