Alternatives and similar repositories for czifile

Users that are interested in czifile are comparing it to the libraries listed below

• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 7 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• juglab / labkit-ui
  Advanced Tool for Labeling And Segmentation
  ☆39Updated last year
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆59Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 3 months ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆86Updated 3 weeks ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated 2 weeks ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• NEUBIAS / neubias-springer-book-2021
  The repository of NEUBIAS textbook 2021
  ☆11Updated 3 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 6 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 months ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆25Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆46Updated last month
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆27Updated last year
• sverger / SurfCut
  Fiji macro for cutting confocal stacks at various depths relative to surface signal
  ☆10Updated 5 years ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 5 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 7 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated 3 weeks ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆141Updated 4 months ago