Alternatives and similar repositories for czifile

Users that are interested in czifile are comparing it to the libraries listed below

• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆31Updated 3 months ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆83Updated last week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆140Updated last month
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆27Updated last year
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆41Updated 3 years ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 7 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• sofroniewn / image-demos
  imaging demos
  ☆9Updated 2 years ago
• clEsperanto / i2k2020_tutorial_clij_clesperanto
  ☆12Updated 4 years ago
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 4 years ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated last year
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆54Updated 4 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆61Updated 4 months ago
• juglab / labkit-ui
  Advanced Tool for Labeling And Segmentation
  ☆36Updated 8 months ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆29Updated last year
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆16Updated 5 years ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆94Updated last month
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated last week
• allen-cell-animated / agave
  ☆47Updated this week
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 3 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago