AllenCellModeling / czifileLinks
czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
☆15Updated 6 years ago
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below
Sorting:
- Easily read and write ome-tiff images in python☆27Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- StarDist plugin for napari☆38Updated 10 months ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- ☆32Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 3 weeks ago
- Tools for distributed alignment of massive images☆82Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last month
- Block-wise task scheduling for large nD volumes.☆30Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- Python image segmentation plugin☆31Updated 4 years ago
- Process images using SimpleITK in napari☆21Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 2 months ago
- A fully scalable robust image feature extraction library.☆24Updated 2 weeks ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆38Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- A general illumination correction method for optical microscopy.☆41Updated 3 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated 7 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆60Updated 3 months ago