icbi-lab / downloader
Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
☆8Updated 3 years ago
Alternatives and similar repositories for downloader:
Users that are interested in downloader are comparing it to the libraries listed below
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆12Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- HOT regions paper☆11Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- interactive plots for differential expression analysis☆25Updated this week
- methylR: a single shiny solution from sequencer data to pathway analysis☆11Updated 3 months ago
- ☆12Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- FunctionaL Omics Processing platform☆13Updated 6 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- ☆23Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ☆26Updated last year
- Python function for TMB snake plots☆16Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Documentation for vcfR☆10Updated 2 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ☆18Updated 6 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆17Updated 9 months ago
- Gene-level general linear mixed model☆19Updated last week
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- ☆12Updated last year
- ☆25Updated last month
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year