thelovelab / rnaseqGeneLinks
RNA-seq workflow: exploratory analysis and differential expression
☆80Updated last year
Alternatives and similar repositories for rnaseqGene
Users that are interested in rnaseqGene are comparing it to the libraries listed below
Sorting:
- ☆61Updated 4 years ago
- R package for genomic feature analysis and visualization☆79Updated 6 months ago
- ☆73Updated 3 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 3 weeks ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- R package for bcbio RNA-seq analysis.☆62Updated last year
- An R interface to the MEME Suite☆52Updated 4 months ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆94Updated last year
- ☆56Updated last week
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 9 years ago
- Devel repository for minfi☆61Updated last year
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆65Updated last month
- Transcript quantification import for modular pipelines☆141Updated last month
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Visualizing transcript structure and annotation using ggplot2☆160Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 9 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆157Updated 2 months ago
- Tutorials on accessing public reference and genomic data☆30Updated 8 months ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- ☆50Updated 4 years ago
- DNA methylation analysis notes from Ming Tang☆90Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆91Updated 7 months ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆34Updated 2 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Moderator Templates for https://www.biostars.org/☆11Updated 4 years ago