hyunhwan-jeong / SalmonTELinks
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
☆89Updated 2 years ago
Alternatives and similar repositories for SalmonTE
Users that are interested in SalmonTE are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆72Updated 2 years ago
- Genomic Association Tester☆32Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆38Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated 3 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated last week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 weeks ago
- A tool for bigWig files.☆119Updated 7 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- ☆31Updated 7 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆61Updated 3 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Tutorial Website☆61Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago