ULMFiT for Genomic Sequence Data
☆287Nov 15, 2019Updated 6 years ago
Alternatives and similar repositories for Genomic-ULMFiT
Users that are interested in Genomic-ULMFiT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 6 months ago
- A list of deep learning implementations in biology☆2,158Sep 12, 2026Updated 2 weeks ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,283Dec 25, 2022Updated 3 years ago
- Deep Learning Part 2, 2019 edition - transcriptions, screenshots and notebooks☆11Jul 19, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- NLP library designed for reproducible experimentation management☆294Jul 25, 2024Updated 2 years ago
- CNN ensemble for prostate cancer Gleason grading☆20Jan 28, 2026Updated 7 months ago
- ☆10Jun 29, 2021Updated 5 years ago
- ☆11Feb 12, 2018Updated 8 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆14Dec 6, 2018Updated 7 years ago
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- Explorations in building seq2seq models using PyTorch and fast.ai☆14Jul 8, 2019Updated 7 years ago
- A generative latent variable model for biological sequence families.☆257Mar 15, 2022Updated 4 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆122Mar 17, 2022Updated 4 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 3 years ago
- Notebooks of experiences with the fastai library☆11Oct 13, 2018Updated 7 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 5 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 8 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 5 years ago
- A tutorial example for nbdev☆15Feb 26, 2022Updated 4 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Jul 21, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- Repository of code for the tutorial on Transfer Learning in NLP held at NAACL 2019 in Minneapolis, MN, USA☆725Oct 16, 2019Updated 6 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- 🔥 Reproducibly benchmarking Keras and PyTorch models☆364Jan 28, 2021Updated 5 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆192Aug 9, 2019Updated 7 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- Fastai + PyTorch DDP in Jupyter Notebook☆27Sep 29, 2020Updated 5 years ago
- ☆21Nov 15, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆780Jan 22, 2026Updated 8 months ago
- fastai V2 implementation of Timeseries classification papers.☆243Oct 20, 2022Updated 3 years ago
- dna2vec: Consistent vector representations of variable-length k-mers☆193Jun 21, 2022Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆69Sep 13, 2022Updated 4 years ago
- Listing of papers about machine learning for proteins.☆1,717May 31, 2024Updated 2 years ago