☆28Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for raptgen
Users that are interested in raptgen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- init commit☆15Oct 31, 2023Updated 2 years ago
- Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction class…☆15Dec 31, 2021Updated 4 years ago
- Differentiable RNA folding in JAX☆27Mar 25, 2025Updated 11 months ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆34May 24, 2024Updated last year
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 2 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Aptamers are single-stranded nucleic acid or amino acid polymers that recognize and bind to targets with high affinity and selectivity. …☆16Jun 22, 2020Updated 5 years ago
- Streamlit template for building SMART on FHIR apps in the Cerner ecosystem.☆11Sep 22, 2023Updated 2 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆16Mar 7, 2026Updated 2 weeks ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Knowledge-Guided Adaptation of Pathology Foundation Models Improves Cross-domain Generalization and Demographic Fairness☆17Oct 14, 2025Updated 5 months ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 4 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- The ViennaRNA Package☆389Feb 24, 2026Updated last month
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆31Aug 29, 2025Updated 6 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆31May 2, 2025Updated 10 months ago
- The LinearDesign mRNA design software.☆207Jun 4, 2024Updated last year
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆21Feb 21, 2025Updated last year
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆19Jul 11, 2024Updated last year
- GTS: Genome Transformation Subprograms☆15Feb 25, 2023Updated 3 years ago
- ☆12Jan 23, 2020Updated 6 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆82Mar 13, 2026Updated last week
- Re-encryption by proxy and (additive) homomorphic encryption☆13Oct 10, 2018Updated 7 years ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆56Nov 8, 2024Updated last year