hklarner / pyboolnet
PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
☆43Updated 2 months ago
Related projects: ⓘ
- Boolean Network Modeling☆38Updated 4 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆15Updated 2 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 11 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆25Updated 6 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated last month
- CANAlization: Control & Redundancy in Boolean Networks☆22Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- The BiGG Models website server☆78Updated 4 years ago
- Rule-based modeling framework☆59Updated 2 months ago
- Repository of tutorials for The COBRA Toolbox☆18Updated last week
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆91Updated 3 weeks ago
- A simplified python interface to COPASI.☆19Updated 3 weeks ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆37Updated last month
- A collection of M models downloaded from published studies☆15Updated 8 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆82Updated 2 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆44Updated 3 weeks ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated last month
- Python library for attractor identification and control in Boolean networks☆28Updated 3 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- framed: a metabolic modeling package for python☆26Updated 4 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆9Updated 4 months ago
- Unified knowledge-driven network inference from omics data☆17Updated this week
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆53Updated last year
- Methods for inferring undirected networks from data☆43Updated 3 years ago
- libRoadRunner: A high-performance SBML simulator☆39Updated this week
- Python Environment for Modeling and Simulating Biological Systems☆106Updated 4 months ago