Alternatives and similar repositories for pyboolnet

Users that are interested in pyboolnet are comparing it to the libraries listed below

• pysb / pysb
  Python framework for Systems Biology modeling
  ☆185Updated 2 months ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆25Updated 2 weeks ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆68Updated 9 months ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆13Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 2 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆30Updated 7 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆113Updated this week
• MathOnco / HAL
  HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs
  ☆36Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 7 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆121Updated last week
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆123Updated 2 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 3 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 2 months ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆28Updated last week
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated this week
• copasi / basico
  A simplified python interface to COPASI.
  ☆22Updated last month
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆66Updated 5 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated 2 months ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 5 years ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 6 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week