Alternatives and similar repositories for ssps

Users that are interested in ssps are comparing it to the libraries listed below

• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 8 months ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• phylovi / bito
  Python-interface C++ library for Bayesian phylogenetics via optimization
  ☆39Updated last year
• CenterForStatistics-UGent / SPsimSeq
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Updated last year
• anna-neufeld / datathin
  ☆14Updated last year
• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated 2 years ago
• dcjones / polee
  Analyzing RNA-Seq with approximate likelihood
  ☆26Updated 4 years ago
• willtownes / glmpca
  ☆95Updated last year
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• AtteAalto / BINGO
  ☆12Updated 3 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆71Updated last month
• msantolini / dynamo
  DYNamics Agnostic Network MOdels
  ☆18Updated 7 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated last week
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 6 years ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆15Updated last year
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• vahuynh / dynGENIE3
  Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
  ☆26Updated 4 months ago
• junyangq / snpnet
  snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
  ☆35Updated last year
• mircare / Brewery
  State-of-the-art ab initio prediction of 1D protein structure annotations
  ☆14Updated 4 years ago
• broadinstitute / pyro-cov
  Pyro models of SARS-CoV-2 variants
  ☆77Updated last year
• calico / impulse
  Fit phenomenological sigmoid and impulse curves with priors to improve interpretability
  ☆10Updated last year
• GPZ-Bioinfo / tmap
  topological data analysis of population-scale microbiomes
  ☆31Updated 2 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆20Updated 5 years ago