Alternatives and similar repositories for biodivine-boolean-models

Users that are interested in biodivine-boolean-models are comparing it to the libraries listed below

• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆13Updated last week
• bnediction / mpbn
  Brief Python implementation of Most Permissive Boolean Networks
  ☆19Updated 7 months ago
• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated 2 weeks ago
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 4 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆49Updated 9 months ago
• bnediction / scBoolSeq
  scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
  ☆13Updated 2 weeks ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆25Updated last year
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆27Updated last week
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆122Updated last month
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated last week
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated last month
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• tlnagy / FCSFiles.jl
  🧫 Read Flow Cytometry Standard (FCS) files in Julia
  ☆17Updated 2 years ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆54Updated 6 years ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆89Updated 2 months ago
• rxncon / rxncon
  ☆10Updated 3 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 7 months ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆22Updated last month
• gdurif / pCMF
  pCMF R package
  ☆14Updated 6 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 months ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆37Updated last week
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated last year
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆185Updated last month