sybila / biodivine-boolean-modelsView external linksLinks
A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.
☆18Jan 13, 2026Updated last month
Alternatives and similar repositories for biodivine-boolean-models
Users that are interested in biodivine-boolean-models are comparing it to the libraries listed below
Sorting:
- Brief Python implementation of Most Permissive Boolean Networks☆21Feb 2, 2026Updated last week
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16Feb 6, 2026Updated last week
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- Boolean Network Modeling☆40Jan 31, 2020Updated 6 years ago
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 2 months ago
- Python library for attractor identification and control in Boolean networks☆31Sep 23, 2025Updated 4 months ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Aug 13, 2025Updated 6 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Feb 6, 2026Updated last week
- CANAlization: Control & Redundancy in Boolean Networks☆27Dec 4, 2025Updated 2 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆52Jan 8, 2026Updated last month
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Nov 13, 2025Updated 3 months ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 4 years ago
- Symbolic analysis of discrete dynamical systems☆24Dec 11, 2023Updated 2 years ago
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆37Feb 3, 2026Updated last week
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Oct 26, 2025Updated 3 months ago
- Sample code demonstrating writing a router for django multi-db support☆19Aug 13, 2012Updated 13 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- ☆11Sep 21, 2025Updated 4 months ago
- A domain-specific language that allows the expression or protein interactions that can be used to build executable models.☆23Dec 13, 2022Updated 3 years ago
- Multiscale simulation of multi-cellular system☆11Updated this week
- Example of clingo usage on website as a client-side JS program☆14Aug 27, 2019Updated 6 years ago
- A Python toolbox for structural identifiability and observability analysis of nonlinear models☆13Apr 21, 2022Updated 3 years ago
- Resources for configuring VSCodium for writing in LaTeX, Markdown, and Python.☆17Nov 6, 2025Updated 3 months ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- ☆10May 11, 2021Updated 4 years ago
- Clustering and resource allocation using Deterministic Annealing Approach and Orthogonal Non-negative Matrix Factorization O-(NMF)☆11Apr 24, 2025Updated 9 months ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- pytest-plus adds new features to pytest☆12Oct 27, 2025Updated 3 months ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 7 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 4 months ago
- KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.☆15Aug 27, 2025Updated 5 months ago
- R package with well defined templates for most common pipelines☆17Jul 11, 2025Updated 7 months ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Structured logging tools☆14Aug 4, 2020Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- The Meta-Species Oriented Biosystem Syntax in Python (MobsPy) was invented to facilitate the design of complex Chemical Reaction Networks☆25Feb 5, 2026Updated last week