vivarium-collective / vivarium-coreLinks
Core Interface and Engine for Vivarium 1.0
☆34Updated last year
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below
Sorting:
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- Rule-based modeling framework☆65Updated 6 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated last week
- Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models☆68Updated 7 months ago
- 🪝 What's the latest version for each database?☆28Updated this week
- Python Environment for Modeling and Simulating Biological Systems☆128Updated last week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆29Updated last week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- Transcriptic CLI & Python Client Library☆49Updated last year
- Efficiently keep track of changes to genomes☆38Updated last year
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆22Updated last week
- Release of the whole cell E. coli model.☆73Updated last year
- An ontology of cell types☆184Updated this week
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated this week
- ☆19Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- DCell browser and gene deletion simulator☆124Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- A web application for classifying objects☆29Updated 4 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 4 months ago
- Programmatic interface to Synapse services for Python☆77Updated this week
- ☆26Updated 3 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆35Updated 6 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Python library for calling Cytoscape Automation via CyREST☆84Updated 3 months ago