Core Interface and Engine for Vivarium 1.0
☆37Dec 3, 2024Updated last year
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- A Microbiology-based Rogue-Like Game written in Lua via Love2D☆12Jul 24, 2021Updated 4 years ago
- A python microsimulation framework☆54May 22, 2026Updated last month
- Computation of Microbial Ecosystems in Time and Space☆28May 5, 2026Updated last month
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated last month
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆33Updated this week
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated 9 months ago
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 2 months ago
- Generate and perturb protein structural ensembles using the ExProSE algorithm☆24Oct 23, 2024Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 10 months ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 3 weeks ago
- Individual-based Dynamics of Microbial Communities Simulator☆19Aug 4, 2022Updated 3 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- A common solve function for scientific machine learning (SciML) and beyond☆31Jun 18, 2026Updated last week
- uvgVPCCenc is an open-source real-time V-PCC encoder library written in C++ from scratch.☆21Jun 10, 2026Updated 2 weeks ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Updated this week
- Library for the GPU-accelerated spatial indexing and processing of particles in 2D and 3D with OpenCL. Currently offers trees based on sp…☆28Aug 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- Population Genetics in Julia☆53Nov 26, 2024Updated last year
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated last week
- ☆10Feb 3, 2024Updated 2 years ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- RTP-over-QUIC elements for GStreamer☆19Dec 20, 2024Updated last year
- ☆24Oct 11, 2024Updated last year
- AI prompts using the toolhouse sdk☆36Oct 4, 2025Updated 8 months ago
- ☆15Dec 17, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A GStreamer plugin that implements a Media over QUIC (MoQ) publisher element.☆17Mar 16, 2025Updated last year
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- Point cloud / volumetric video player for Unity☆19Oct 27, 2022Updated 3 years ago
- Virtual Cell Framework☆130Updated this week
- A Julia-based framework for molecular modelling☆62Feb 11, 2024Updated 2 years ago
- An epithelium simulation library☆67Feb 4, 2026Updated 4 months ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago