vivarium-collective / vivarium-coreLinks
Core Interface and Engine for Vivarium 1.0
☆33Updated 8 months ago
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below
Sorting:
- A web application for classifying objects☆29Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago
- Release of the whole cell E. coli model.☆68Updated 8 months ago
- Python framework for Systems Biology modeling☆185Updated last month
- An ontology of cell types☆181Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Programmatic interface to Synapse services for Python☆75Updated this week
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆33Updated last year
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆29Updated 3 years ago
- Efficiently keep track of changes to genomes☆38Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆122Updated last month
- Code sharing related to DREAM challenges☆23Updated 8 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆30Updated 7 years ago
- Multi-Scale Integrated Cell☆35Updated 3 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆39Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last week
- A Python package for gene network analysis☆32Updated 3 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆35Updated 2 months ago
- Tools for building and manipulating graphs in Python☆42Updated this week
- Branching Gaussian process☆30Updated 2 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- Python Flow Cytometry Calibration Library☆52Updated 4 months ago
- Biological Network Integration using Convolutions☆62Updated last year