vivarium-collective / vivarium-core
Core Interface and Engine for Vivarium 1.0
☆29Updated 3 months ago
Alternatives and similar repositories for vivarium-core:
Users that are interested in vivarium-core are comparing it to the libraries listed below
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆27Updated 2 years ago
- ☆19Updated last year
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆28Updated last year
- ☆22Updated 2 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- Efficiently keep track of changes to genomes☆38Updated 8 months ago
- Rule-based modeling framework☆61Updated last week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Code sharing related to DREAM challenges☆23Updated 8 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last month
- Biological Network Integration using Convolutions☆62Updated last year
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆20Updated last month
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- Release of the whole cell E. coli model.☆64Updated 3 months ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Updated 5 years ago
- ☆31Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- Python Environment for Modeling and Simulating Biological Systems☆113Updated last month
- Virtual Cell Framework☆77Updated this week
- a dataloader to work with large single cell datasets from lamindb☆21Updated this week
- Multi-Scale Integrated Cell☆35Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 8 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆23Updated this week
- Species-aware DNA language modeling☆18Updated 2 years ago
- ☆16Updated 3 years ago