Core Interface and Engine for Vivarium 1.0
☆35Dec 3, 2024Updated last year
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- 3D computational model for lipid membranes☆28Feb 17, 2025Updated last year
- Simulation-based analysis of complex systems involving people, devices, physical elements, and dynamic environments.☆40Feb 18, 2025Updated last year
- 🖨️ Print pictures with living micro-organisms!☆15Apr 9, 2025Updated last year
- A python microsimulation framework☆53Apr 1, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Apr 2, 2021Updated 5 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Mar 30, 2026Updated last week
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated last month
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 7 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated last year
- Python package for creating, calibrating and simulating RBA models☆13Jun 5, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generate and perturb protein structural ensembles using the ExProSE algorithm☆23Oct 23, 2024Updated last year
- ☆21Oct 6, 2024Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Mar 30, 2026Updated last week
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last week
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- List of Computer Science courses with video lectures.☆12Nov 6, 2024Updated last year
- uvgVPCCenc is an open-source real-time V-PCC encoder library written in C++ from scratch.☆17Mar 13, 2026Updated 3 weeks ago
- Python package to load and query ARCHS4 data☆27Jul 25, 2025Updated 8 months ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- AI prompts using the toolhouse sdk☆31Oct 4, 2025Updated 6 months ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jan 6, 2023Updated 3 years ago
- Library for the GPU-accelerated spatial indexing and processing of particles in 2D and 3D with OpenCL. Currently offers trees based on sp…☆28Aug 5, 2024Updated last year
- Release of the whole cell E. coli model.☆76Dec 10, 2024Updated last year
- ☆11Aug 2, 2024Updated last year
- Population Genetics in Julia☆53Nov 26, 2024Updated last year
- A simplified python interface to COPASI.☆25Mar 19, 2026Updated 3 weeks ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- ☆10Feb 3, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- CLI tool that turns your current git changes into conventional git add/commit commands using Gemini.☆21Feb 21, 2026Updated last month
- ☆11Sep 19, 2024Updated last year
- ☆15Dec 17, 2023Updated 2 years ago
- ☆12Jun 30, 2024Updated last year
- ☆24Oct 11, 2024Updated last year
- Integrated OBO ontology store☆48Feb 13, 2026Updated last month