vivarium-collective / vivarium-coreLinks
Core Interface and Engine for Vivarium 1.0
☆34Updated last year
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below
Sorting:
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated this week
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- Efficiently keep track of changes to genomes☆38Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- ☆19Updated 2 years ago
- Virtual Cell Framework☆104Updated last week
- A Python package for gene network analysis☆32Updated 3 years ago
- An ontology of cell types☆184Updated last week
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 5 months ago
- Programmatic interface to Synapse services for Python☆77Updated this week
- 🪝 What's the latest version for each database?☆28Updated this week
- ☆24Updated 7 months ago
- DCell browser and gene deletion simulator☆124Updated 3 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11Updated 2 years ago
- Rule-based modeling framework☆65Updated 7 months ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- A web application for classifying objects☆29Updated 4 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆55Updated 2 months ago
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- Benchmark agents on BioML tasks☆63Updated 3 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Updated 6 months ago
- Biological Network Integration using Convolutions☆63Updated last year