Alternatives and similar repositories for vivarium-core:

Users that are interested in vivarium-core are comparing it to the libraries listed below

• bowang-lab / scFormer
  ☆19Updated last year
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆35Updated 3 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆40Updated 3 months ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆40Updated 2 weeks ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆38Updated 3 weeks ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆20Updated last week
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆53Updated last year
• idekerlab / MuSIC
  Multi-Scale Integrated Cell
  ☆35Updated 2 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated last year
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆26Updated 2 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 6 years ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆43Updated this week
• theislab / prophet
  ☆28Updated last month
• labsyspharm / visinity
  ☆16Updated 7 months ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 3 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆28Updated last month
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated 3 weeks ago
• ginkgobioworks / edge
  Efficiently keep track of changes to genomes
  ☆38Updated 6 months ago
• dreamtools / dreamtools
  Code sharing related to DREAM challenges
  ☆23Updated 7 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆21Updated this week
• wahlby-lab / spage2vec
  ☆14Updated 3 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆49Updated this week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆43Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated 4 months ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago