vivarium-collective / vivarium-coreLinks
Core Interface and Engine for Vivarium 1.0
☆33Updated 8 months ago
Alternatives and similar repositories for vivarium-core
Users that are interested in vivarium-core are comparing it to the libraries listed below
Sorting:
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆33Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 weeks ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated this week
- Python framework for Systems Biology modeling☆183Updated 2 weeks ago
- ☆16Updated last year
- Efficiently keep track of changes to genomes☆38Updated last year
- MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…☆10Updated 3 years ago
- Rule-based modeling framework☆64Updated 2 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆29Updated 7 years ago
- Multi-Scale Integrated Cell☆35Updated 2 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Programmatic interface to Synapse services for Python☆75Updated last week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 2 weeks ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆63Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago
- An ontology of cell types☆180Updated this week
- Release of the whole cell E. coli model.☆68Updated 7 months ago
- DCell browser and gene deletion simulator☆124Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- biotoolsregistry : discovery portal for bioinformatics☆79Updated last week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated last week
- Virtual Cell Framework☆90Updated last week
- netZooPy is a network biology package implemented in Python.☆89Updated last month
- A flux balance analysis machine learning classifier for microbial GWAS☆14Updated 5 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago