ialbert / booleannetLinks
Boolean Network Modeling
☆40Updated 5 years ago
Alternatives and similar repositories for booleannet
Users that are interested in booleannet are comparing it to the libraries listed below
Sorting:
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆51Updated last year
- DCell browser and gene deletion simulator☆124Updated 3 years ago
- Rule-based modeling framework☆65Updated 7 months ago
- CANAlization: Control & Redundancy in Boolean Networks☆26Updated 3 weeks ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Code sharing related to DREAM challenges☆24Updated 8 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆121Updated 2 weeks ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- Connect the dots in networks.☆20Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆130Updated 3 weeks ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 9 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated 4 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Updated this week
- Python framework for Systems Biology modeling☆190Updated 5 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- Denoising Autoencoders for Phenotype Stratification☆42Updated 7 years ago
- Curation and analysis of metabolic models☆35Updated 2 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 3 years ago
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆37Updated 2 years ago
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆63Updated last month
- Model zoo for genomics☆173Updated 2 weeks ago
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆33Updated 5 years ago
- netZooPy is a network biology package implemented in Python.☆94Updated 6 months ago