Alternatives and similar repositories for booleannet

Users that are interested in booleannet are comparing it to the libraries listed below

• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆50Updated 11 months ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆124Updated 2 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 5 months ago
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆26Updated last month
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 5 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆114Updated this week
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆28Updated last week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• andreasottoriva / neutral-tumor-evolution
  Stochastic simulation of next-generation sequencing data from neutrally evolving tumors
  ☆10Updated 8 years ago
• ciemss / pyciemss
  Causal and probabilistic reasoning with continuous time dynamical systems
  ☆19Updated 2 months ago
• dreamtools / dreamtools
  Code sharing related to DREAM challenges
  ☆23Updated 8 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆92Updated 4 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆188Updated 3 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆43Updated last week
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆20Updated 5 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 3 months ago
• ecell / ecell4_base
  An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…
  ☆63Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 6 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆152Updated this week
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated last year
• blekhmanlab / rxivist
  API providing access to papers and authors scraped from biorxiv.org
  ☆56Updated 2 years ago