ialbert / booleannet
Boolean Network Modeling
☆40Updated 5 years ago
Alternatives and similar repositories for booleannet:
Users that are interested in booleannet are comparing it to the libraries listed below
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated 2 weeks ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆44Updated 5 months ago
- CANAlization: Control & Redundancy in Boolean Networks☆23Updated 8 months ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 3 weeks ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆24Updated this week
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- DYNamics Agnostic Network MOdels☆18Updated 6 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 8 years ago
- Python library for attractor identification and control in Boolean networks☆28Updated 10 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Rule-based modeling framework☆61Updated last week
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- A python package for simulation and analysis of dynamic Boolean network models☆11Updated 6 years ago
- ☆12Updated last month
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Repository of tutorials for The COBRA Toolbox☆22Updated 2 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆105Updated 3 weeks ago
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- Git Repo for simulating Boolean Models☆33Updated 10 months ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆16Updated 6 months ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 2 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 5 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Computational Biology- Spring 2021☆46Updated 3 years ago