ialbert / booleannetLinks
Boolean Network Modeling
☆40Updated 6 years ago
Alternatives and similar repositories for booleannet
Users that are interested in booleannet are comparing it to the libraries listed below
Sorting:
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆52Updated last month
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- DCell browser and gene deletion simulator☆124Updated 3 years ago
- Code sharing related to DREAM challenges☆24Updated 8 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆27Updated 2 months ago
- Fast Inference of Networks from Directed Regulations☆22Updated 2 years ago
- Methods for inferring undirected networks from data☆47Updated 4 years ago
- Rule-based modeling framework☆66Updated 8 months ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆33Updated 5 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Updated this week
- Yet Another Motif Discovery Algorithm☆53Updated 7 years ago
- Python framework for Systems Biology modeling☆191Updated 6 months ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 9 years ago
- DYNamics Agnostic Network MOdels☆18Updated 7 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆45Updated 6 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆123Updated last week
- Programmatic interface to Synapse services for Python☆78Updated this week
- ☆34Updated 7 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 4 months ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆38Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆131Updated 2 months ago
- API providing access to papers and authors scraped from biorxiv.org☆56Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆78Updated last year
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 3 years ago
- netZooPy is a network biology package implemented in Python.☆94Updated last month
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Whole-cell modeling tutorials☆17Updated 5 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 6 years ago