colomoto / bioLQMLinks
toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
☆19Updated last month
Alternatives and similar repositories for bioLQM
Users that are interested in bioLQM are comparing it to the libraries listed below
Sorting:
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆15Updated this week
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆17Updated 4 months ago
- Brief Python implementation of Most Permissive Boolean Networks☆20Updated 2 weeks ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last week
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Updated 4 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆51Updated last year
- Boolean Network Modeling☆40Updated 5 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆26Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 10 months ago
- A Python Library to interact with the Cell Collective API v2☆12Updated 3 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated last month
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- GeneNetwork (2nd generation)☆37Updated this week
- Python implementation of the Loom file format - http://loompy.org☆148Updated 11 months ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- A python package for visualization and analysis of high-throughput flow cytometry data☆123Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated 11 months ago
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆44Updated 2 months ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 4 months ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆38Updated last year
- Python biomart API☆69Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Updated 6 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Updated 2 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Updated 6 years ago