colomoto / bioLQM
toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
☆19Updated last month
Alternatives and similar repositories for bioLQM:
Users that are interested in bioLQM are comparing it to the libraries listed below
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆11Updated last month
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated last week
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 2 weeks ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated last month
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Updated last year
- A Python Library to interact with the Cell Collective API v2☆12Updated 2 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆44Updated 4 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated last month
- Boolean Network Modeling☆38Updated 5 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆15Updated 5 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆23Updated this week
- CANAlization: Control & Redundancy in Boolean Networks☆23Updated 6 months ago
- Curation and analysis of metabolic models☆34Updated last year
- Library for manipulating genomic variants and predicting their effects☆83Updated 8 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆9Updated 5 years ago
- Methods for inferring undirected networks from data☆44Updated 3 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆88Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Python library for attractor identification and control in Boolean networks☆28Updated 9 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- Collect of SO Ontologies☆99Updated 3 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- The standard for open-source GEMs on GitHub☆19Updated last year
- Reasoning on the response of logical signaling networks with Answer Set Programming☆13Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 7 years ago
- Parsing tools for GTF (gene transfer format) files☆116Updated 2 weeks ago