Alternatives and similar repositories for bioLQM

Users that are interested in bioLQM are comparing it to the libraries listed below

• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆25Updated last month
• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆13Updated 3 months ago
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 4 years ago
• bnediction / mpbn
  Brief Python implementation of Most Permissive Boolean Networks
  ☆19Updated 3 months ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆13Updated last week
• BioSystemsUM / cobamp
  Constraint-based modeling framework for the enumeration of pathway analysis concepts
  ☆14Updated last year
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆45Updated 6 months ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 3 months ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆23Updated 8 months ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• sbgn / libsbgn
  Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
  ☆16Updated 7 months ago
• jcrozum / pystablemotifs
  Python library for attractor identification and control in Boolean networks
  ☆28Updated 11 months ago
• cellcollective / ccapi
  A Python Library to interact with the Cell Collective API v2
  ☆12Updated 2 years ago
• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆9Updated 5 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆25Updated this week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 4 years ago
• SynBioDex / tyto
  Use ontology terms in your Python application
  ☆19Updated 3 months ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated last month
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• opencobra / COBRA.jl
  High-level, high-performance, constraint-based reconstruction and analysis in Julia
  ☆62Updated 2 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆42Updated last year
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆24Updated 6 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago