colomoto / bioLQMLinks
toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
☆19Updated last month
Alternatives and similar repositories for bioLQM
Users that are interested in bioLQM are comparing it to the libraries listed below
Sorting:
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆13Updated last month
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated 3 months ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last week
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 2 weeks ago
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Updated 2 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆50Updated 11 months ago
- A Python Library to interact with the Cell Collective API v2☆12Updated 2 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 8 months ago
- CANAlization: Control & Redundancy in Boolean Networks☆26Updated 2 weeks ago
- ☆10Updated 3 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Updated 2 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆36Updated last year
- Python framework for Systems Biology modeling☆186Updated 3 months ago
- Python implementation of the Loom file format - http://loompy.org☆147Updated 10 months ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 2 months ago
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Updated 6 years ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆44Updated 3 weeks ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated 3 weeks ago
- GeneNetwork (2nd generation)☆37Updated this week
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆16Updated last year
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Python library for attractor identification and control in Boolean networks☆29Updated 3 weeks ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- A python package for visualization and analysis of high-throughput flow cytometry data☆121Updated 2 years ago
- EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concept…☆130Updated 3 weeks ago