Hetnets in Python (relocated from dhimmel/hetio)
☆103Sep 4, 2025Updated 7 months ago
Alternatives and similar repositories for hetnetpy
Users that are interested in hetnetpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hetionet: an integrative network of disease☆346Apr 3, 2023Updated 3 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Sep 22, 2017Updated 8 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆72Nov 7, 2025Updated 5 months ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Updated this week
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆143Apr 2, 2026Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Mar 19, 2024Updated 2 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Template for creating a BioCypher-driven knowledge graph☆13Jan 15, 2026Updated 2 months ago
- ☆58Nov 15, 2020Updated 5 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 2 weeks ago
- Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.☆12Jun 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- OWLTools☆115Sep 9, 2024Updated last year
- Schema and generated objects for biolink data model and upper ontology☆232Apr 2, 2026Updated last week
- OBO-formatted ontologies → networkx (Python 3)☆151Mar 26, 2025Updated last year
- KaBOB (Knowledge Base Of Biomedicine)☆11Nov 13, 2018Updated 7 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 7 years ago
- A knowledge graph and a set of tools for drug repurposing☆678Apr 19, 2022Updated 3 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆201May 3, 2024Updated last year
- 🪝 What's the latest version for each database?☆28Updated this week
- python library for working with ontologies and ontology associations☆133Feb 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated last year
- KGX is a Python library for exchanging Knowledge Graphs☆139Feb 5, 2026Updated 2 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated 3 weeks ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated 2 months ago
- A Knowledge Graph for Relational Learning On Biological Data☆110Mar 21, 2024Updated 2 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆43Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Apr 2, 2026Updated last week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 6 months ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16May 15, 2025Updated 10 months ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆158May 3, 2024Updated last year
- Python package for the paper "Inductive Document Network Embedding with Topic-Word Attention" (https://arxiv.org/pdf/2001.03369.pdf)☆17Dec 8, 2022Updated 3 years ago