Hetnets in Python (relocated from dhimmel/hetio)
☆103Sep 4, 2025Updated 11 months ago
Alternatives and similar repositories for hetnetpy
Users that are interested in hetnetpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hetionet: an integrative network of disease☆357Apr 3, 2023Updated 3 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Sep 22, 2017Updated 8 years ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆15Updated this week
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆77Jun 3, 2026Updated 2 months ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆64Jul 28, 2026Updated last week
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆146Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆34Mar 19, 2024Updated 2 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Template for creating a BioCypher-driven knowledge graph☆13Jan 15, 2026Updated 6 months ago
- ☆59Nov 15, 2020Updated 5 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 4 months ago
- Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.☆12Jun 26, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- OWLTools☆115Jul 7, 2026Updated last month
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆27Updated this week
- KaBOB (Knowledge Base Of Biomedicine)☆11Nov 13, 2018Updated 7 years ago
- A knowledge graph and a set of tools for drug repurposing☆703Apr 19, 2022Updated 4 years ago
- Schema and generated objects for biolink data model and upper ontology☆258Updated this week
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆207May 3, 2024Updated 2 years ago
- python library for working with ontologies and ontology associations☆133Feb 11, 2025Updated last year
- 🪝 What's the latest version for each database?☆31Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆46Updated this week
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Data Integration tool utilizing network information for predictive analyses☆16May 15, 2025Updated last year
- A full-text article retrieval pipeline for biomedical literature.☆23Jul 9, 2026Updated last month
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Updated this week
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆110Mar 21, 2024Updated 2 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆36Aug 4, 2022Updated 4 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 10 months ago
- Python package for the paper "Inductive Document Network Embedding with Topic-Word Attention" (https://arxiv.org/pdf/2001.03369.pdf)☆17Dec 8, 2022Updated 3 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆161May 3, 2024Updated 2 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆184Jul 21, 2026Updated 2 weeks ago
- Mondo Disease Ontology☆317Updated this week
- A resource of adverse drug effects extracted from FDA structured product labels☆105Updated this week
- Wikidata service to help create or link author items to published articles☆37Jun 21, 2025Updated last year