Alternatives and similar repositories for hetnetpy:

Users that are interested in hetnetpy are comparing it to the libraries listed below

• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 2 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• snap-stanford / multiscale-interactome
  ☆66Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 4 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆138Updated last month
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• dhimmel / disease-ontology
  User-friendly extensions to the Disease Ontology
  ☆20Updated 8 years ago
• dsi-bdi / biokg
  A Knowledge Graph for Relational Learning On Biological Data
  ☆96Updated last year
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆65Updated last week
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆34Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆186Updated last year
• dhimmel / clintrials
  Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov
  ☆27Updated 8 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆53Updated last week
• typedb-osi / typedb-bio
  TypeDB Bio: Biomedical Knowledge Graph
  ☆86Updated 10 months ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• bio-ontology-research-group / multi-drug-embedding
  Method for drug repurposing from knowledge graphs and literature
  ☆34Updated 4 years ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆18Updated 5 years ago
• snap-stanford / mambo
  ☆37Updated 7 years ago
• hetio / hetionet
  Hetionet: an integrative network of disease
  ☆283Updated 2 years ago
• Knowledge-Graph-Hub / kg-covid-19
  An instance of KG Hub to produce a knowledge graph for COVID-19 response.
  ☆81Updated last year
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆39Updated last week
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• related-sciences / nxontology
  NetworkX-based Python library for representing ontologies
  ☆89Updated last year
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆16Updated last week
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆124Updated last week
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆19Updated 7 years ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆48Updated 5 months ago