hetio / hetnetpyLinks
Hetnets in Python (relocated from dhimmel/hetio)
☆100Updated 4 months ago
Alternatives and similar repositories for hetnetpy
Users that are interested in hetnetpy are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆197Updated last year
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 9 months ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆203Updated 3 weeks ago
- TypeDB Bio: Biomedical Knowledge Graph☆88Updated 7 months ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Updated 9 years ago
- Grounding of biomedical named entities with contextual disambiguation☆46Updated last week
- NetworkX-based Python library for representing ontologies☆93Updated 2 years ago
- ☆130Updated 2 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated this week
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- python library for working with ontologies and ontology associations☆133Updated 11 months ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆107Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆55Updated last week
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆137Updated last week
- ☆24Updated 5 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆74Updated this week
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Updated 8 years ago
- 🪝 What's the latest version for each database?☆28Updated this week
- code for Gogleva et al manuscript☆46Updated 3 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated 2 weeks ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Updated 6 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- Hetionet: an integrative network of disease☆331Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week