SmartDataAnalytics / BioKEEN
A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pykeen/pykeen/
☆46Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BioKEEN
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆33Updated 4 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆39Updated last week
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- ☆60Updated 2 years ago
- ☆54Updated 3 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆13Updated 4 years ago
- A Standard Database for Drug Repositioning☆17Updated 7 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated 11 months ago
- A Knowledge Graph for Relational Learning On Biological Data☆80Updated 7 months ago
- ☆20Updated last year
- Drug repurposing for COVID-19 using literature-based discovery☆27Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆45Updated 3 years ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆38Updated 3 weeks ago
- ☆40Updated 4 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated this week
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆116Updated 3 months ago
- A literature review for constructing and using knowledge graphs in a biomedical setting.☆11Updated 4 years ago
- ☆23Updated 3 years ago
- ☆125Updated last year
- CoCoScore: context-aware co-occurrence scores for text mining applications☆18Updated 5 years ago
- ☆15Updated last year
- Predicting adverse drug reactions from a knowledge graph☆27Updated 3 years ago
- a module to calculate the MeSH similarity☆24Updated 2 years ago
- Open Targets Library ETL Pipeline | Apache Beam☆16Updated 3 years ago