SmartDataAnalytics / BioKEENLinks
A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pykeen/pykeen/
☆45Updated 2 years ago
Alternatives and similar repositories for BioKEEN
Users that are interested in BioKEEN are comparing it to the libraries listed below
Sorting:
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆98Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆131Updated 2 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last month
- ☆41Updated 5 years ago
- ☆69Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- ☆22Updated 2 years ago
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- ☆24Updated 4 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 4 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Updated 5 years ago
- ☆57Updated 4 years ago
- 🪝 What's the latest version for each database?☆27Updated this week
- A literature review for constructing and using knowledge graphs in a biomedical setting.☆11Updated 5 years ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆72Updated last week
- Open Targets Library ETL Pipeline | Apache Beam☆16Updated 4 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆28Updated 2 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆24Updated 2 weeks ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 3 months ago
- TypeDB Bio: Biomedical Knowledge Graph☆85Updated 2 months ago
- Knowledge graphs generation from unstructured text.☆71Updated 6 months ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated last month