Alternatives and similar repositories for RTX-KG2:

Users that are interested in RTX-KG2 are comparing it to the libraries listed below

• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated last month
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated last month
• ninglab / CTKG
  The Clinical Trials Knowledge Graph
  ☆57Updated 2 years ago
• LHNCBC / SemRep
  ☆67Updated 2 years ago
• MindRank-Biotech / PharmKG
  ☆55Updated 4 years ago
• ncbi / AIONER
  AIONER
  ☆54Updated 9 months ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 4 years ago
• mims-harvard / Clinical-knowledge-embeddings
  Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine
  ☆53Updated this week
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆53Updated 8 months ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 2 years ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆65Updated last week
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆34Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆186Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• AstraZeneca / kgem-in-drug-discovery
  Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…
  ☆33Updated 2 weeks ago
• dsi-bdi / biokg
  A Knowledge Graph for Relational Learning On Biological Data
  ☆96Updated last year
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆61Updated last year
• AnacletoLAB / RNA-KG
  ☆21Updated 5 months ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆53Updated last week
• snap-stanford / multiscale-interactome
  ☆66Updated last year
• lasigeBioTM / BENT
  Biomedical Term Annotator
  ☆9Updated 2 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• healx / automated-biological-evidence-generation-in-drug-discovery
  Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…
  ☆11Updated last year
• AstraZeneca / biomedical-kg-topological-imbalance
  Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…
  ☆17Updated 2 weeks ago
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆19Updated 7 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• tatonetti-lab / nsides-release
  Analysis notebooks and database interaction scripts for the nsides project
  ☆19Updated 7 months ago