OBO-formatted ontologies → networkx (Python 3)
☆157Oct 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for obonet
Users that are interested in obonet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python frontend to (Open Biomedical) Ontologies.☆268Oct 19, 2026Updated last week
- python library for working with ontologies and ontology associations☆133Feb 11, 2025Updated last year
- NetworkX-based Python library for representing ontologies☆96Jul 12, 2023Updated 3 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Python library to handle Gene Ontology (GO) terms☆908Oct 23, 2026Updated last week
- Mondo Disease Ontology☆329Updated this week
- Semantic Similarity Measures using Disjunctive Shared Information☆26Oct 3, 2025Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- A web application for exploring, analyzing, and curating pathway databases☆13Aug 12, 2023Updated 3 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆77Oct 19, 2026Updated last week
- User-friendly extensions to the Disease Ontology☆20Sep 9, 2016Updated 10 years ago
- Repository for the Human Disease Ontology.☆416Updated this week
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Hetionet: an integrative network of disease☆363Apr 3, 2023Updated 3 years ago
- 🎡 Unified access to OLS instances like from the EBI and TIB☆14Apr 20, 2026Updated 6 months ago
- RO is an ontology of relations for use with biological ontologies☆113Oct 5, 2026Updated 3 weeks ago
- GO enrichment with python -- pandas meets networkx☆87Jul 15, 2020Updated 6 years ago
- OWLTools☆116Jul 7, 2026Updated 3 months ago
- ☆17Nov 11, 2022Updated 3 years ago
- 🏷️ Unified access to biomedical ontologies☆12Aug 13, 2026Updated 2 months ago
- Schema and generated objects for biolink data model and upper ontology☆267Updated this week
- Grounding of biomedical named entities with contextual disambiguation☆56Jun 29, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- KGX is a Python library for exchanging Knowledge Graphs☆189Updated this week
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 7 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆66Oct 19, 2026Updated last week
- The Experimental Factor Ontology (EFO)☆65Oct 22, 2026Updated last week
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Apr 16, 2021Updated 5 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Communitiy-based Cell Line Ontology☆19Jun 20, 2026Updated 4 months ago
- Faultless AST for Open Biomedical Ontologies in Python.☆34Oct 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆32May 9, 2025Updated last year
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- Gene Set Enrichment Analysis in Python☆716Sep 2, 2026Updated last month
- An ontology of cell types☆218Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆87Oct 20, 2026Updated last week
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- Improving Inductive Link Prediction Using Hyper-Relational Facts☆16May 25, 2022Updated 4 years ago