dhimmel / obonet
OBO-formatted ontologies โ networkx (Python 3)
โ137Updated 2 weeks ago
Alternatives and similar repositories for obonet:
Users that are interested in obonet are comparing it to the libraries listed below
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ63Updated this week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ122Updated this week
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ52Updated 2 weeks ago
- โ22Updated 2 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseasesโ48Updated 4 months ago
- NetworkX-based Python library for representing ontologiesโ86Updated last year
- python library for working with ontologies and ontology associationsโ128Updated 2 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ33Updated this week
- A resource of adverse drug effects extracted from FDA structured product labelsโ72Updated 2 months ago
- Hetnets in Python (relocated from dhimmel/hetio)โ94Updated last year
- Github repo for the Experimental Factor Ontology (EFO)โ57Updated this week
- API for linked biological knowledgeโ64Updated 2 years ago
- a module to calculate the MeSH similarityโ26Updated 4 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.โ88Updated 2 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingโ32Updated 7 years ago
- A framework for keeping biomedical text mining result up-to-dateโ42Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Updated 3 years ago
- ๐ช What's the latest version for each database?โ27Updated this week
- A python package for pathway visualizationโ38Updated 4 years ago
- TypeDB Bio: Biomedical Knowledge Graphโ86Updated 9 months ago
- โ14Updated this week
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)โ110Updated 3 years ago
- An ontology of cell typesโ168Updated this week
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotatโฆโ139Updated this week
- Retrieve and process PubTator annotationsโ44Updated last year
- โ24Updated 4 years ago
- Function prediction using a deep ontology-aware classifierโ82Updated 2 years ago
- Biological Network Integration using Convolutionsโ62Updated last year
- A Standard Database for Drug Repositioningโ19Updated 7 years ago
- Grounding of biomedical named entities with contextual disambiguationโ43Updated 3 weeks ago