drlivingston / kabobLinks
KaBOB (Knowledge Base Of Biomedicine)
☆10Updated 6 years ago
Alternatives and similar repositories for kabob
Users that are interested in kabob are comparing it to the libraries listed below
Sorting:
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated 2 weeks ago
- Integrated OBO ontology store☆48Updated 2 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- TypeDB Bio: Biomedical Knowledge Graph☆85Updated 3 months ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last month
- KGX is a Python library for exchanging Knowledge Graphs☆131Updated last week
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆13Updated 5 months ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated 2 weeks ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆48Updated last week
- Schema and generated objects for biolink data model and upper ontology☆202Updated last week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 9 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated last year
- ☆24Updated 4 years ago
- python library for working with ontologies and ontology associations☆129Updated 7 months ago
- NetworkX-based Python library for representing ontologies☆90Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- LLM-driven curation assist tool☆95Updated last month
- Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets☆136Updated 4 years ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆151Updated 3 months ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆44Updated 3 weeks ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated 3 weeks ago
- FHIR Ontop OMOP Implementation☆20Updated last year