biolink / biolink-model
Schema and generated objects for biolink data model and upper ontology
โ195Updated this week
Alternatives and similar repositories for biolink-model:
Users that are interested in biolink-model are comparing it to the libraries listed below
- An ontology of cell typesโ169Updated this week
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ53Updated last week
- Github repo for the Experimental Factor Ontology (EFO)โ57Updated last week
- Mondo Disease Ontologyโ250Updated this week
- RO is an ontology of relations for use with biological ontologiesโ95Updated 3 weeks ago
- python library for working with ontologies and ontology associationsโ128Updated 2 months ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ139Updated 3 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ186Updated last year
- Data transformation framework for LinkML data modelsโ53Updated 2 months ago
- A system for managing OBO PURLsโ81Updated last month
- KGX is a Python library for exchanging Knowledge Graphsโ124Updated last week
- An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontologyโ139Updated this week
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ109Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ65Updated last week
- Metadata and website for the Open Bio Ontologies Foundry Ontology Registryโ176Updated this week
- The Ontology for Biomedical Investigationsโ79Updated last week
- Ontology for representing scientific evidence and provenance informationโ50Updated 9 months ago
- Monarch Initiative website and APIโ24Updated this week
- PATO - the Phenotype And Trait Ontologyโ59Updated this week
- source files for OBA (Ontology of Biological Attributes)โ27Updated 3 weeks ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ129Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ79Updated 3 weeks ago
- Integrated OBO ontology storeโ45Updated 2 months ago
- Modular environmental exposures ontologyโ31Updated last year
- Repository for the GA4GH phenopacket schemaโ85Updated 7 months ago
- Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)โ63Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ34Updated this week
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)โ58Updated 6 years ago
- Ontology Lookup Service from SPOT at EBIโ98Updated 2 years ago