biolink / biolink-modelLinks
Schema and generated objects for biolink data model and upper ontology
☆218Updated this week
Alternatives and similar repositories for biolink-model
Users that are interested in biolink-model are comparing it to the libraries listed below
Sorting:
- python library for working with ontologies and ontology associations☆133Updated 10 months ago
- RO is an ontology of relations for use with biological ontologies☆106Updated last week
- Ontology Access Kit: A python library and command line application for working with ontologies☆155Updated 6 months ago
- Mondo Disease Ontology☆287Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆197Updated last year
- A system for managing OBO PURLs☆86Updated last week
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆113Updated 2 weeks ago
- An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology☆146Updated last week
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)☆62Updated 6 years ago
- The EMBL-EBI Ontology Lookup Service (OLS)☆75Updated this week
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆74Updated last week
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week
- KGX is a Python library for exchanging Knowledge Graphs☆136Updated this week
- Ontology Lookup Service from SPOT at EBI☆95Updated 2 years ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆138Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆82Updated last month
- Data ingest application for Monarch Initiative knowledge graph using Koza☆20Updated this week
- Integrated OBO ontology store☆48Updated 2 months ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- An ontology of cell types☆184Updated last week
- source files for OBA (Ontology of Biological Attributes)☆27Updated last week
- Data transformation framework for LinkML data models☆60Updated last week
- The Ontology for Biomedical Investigations☆97Updated last week
- Metadata and website for the Open Bio Ontologies Foundry Ontology Registry☆186Updated last week
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 9 months ago
- Medical action ontology☆60Updated 3 months ago
- PATO - the Phenotype And Trait Ontology☆59Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated last week