Alternatives and similar repositories for biolink-model

Users that are interested in biolink-model are comparing it to the libraries listed below

• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆128Updated 5 months ago
• INCATools / ontology-access-kit
  Ontology Access Kit: A python library and command line application for working with ontologies
  ☆146Updated 2 months ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• monarch-initiative / mondo
  Mondo Disease Ontology
  ☆262Updated this week
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆56Updated 2 weeks ago
• oborel / obo-relations
  RO is an ontology of relations for use with biological ontologies
  ☆96Updated 2 weeks ago
• obophenotype / uberon
  An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
  ☆142Updated last week
• EBISPOT / ols4
  The EMBL-EBI Ontology Lookup Service (OLS)
  ☆67Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆192Updated last year
• EBISPOT / OLS
  Ontology Lookup Service from SPOT at EBI
  ☆97Updated 2 years ago
• jamesaoverton / obo-tutorial
  A tutorial on using Open Biological and Biomedical Ontologies (OBO)
  ☆59Updated 6 years ago
• OBOAcademy / obook
  OBO Organized Knowledge: Training materials for becoming an OBO engineer
  ☆110Updated 2 weeks ago
• monarch-initiative / monarch-app
  Monarch Initiative website and API
  ☆28Updated this week
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated this week
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆130Updated last month
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆133Updated this week
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆47Updated 3 weeks ago
• Knowledge-Graph-Hub / kg-covid-19
  An instance of KG Hub to produce a knowledge graph for COVID-19 response.
  ☆82Updated 2 years ago
• monarch-initiative / koza
  Data transformation framework for LinkML data models
  ☆54Updated this week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated this week
• monarch-initiative / SEPIO-ontology
  Ontology for representing scientific evidence and provenance information
  ☆51Updated last year
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆71Updated this week
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆84Updated this week
• obophenotype / cell-ontology
  An ontology of cell types
  ☆180Updated this week
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated this week
• monarch-initiative / monarch-ingest
  Data ingest application for Monarch Initiative knowledge graph using Koza
  ☆19Updated this week
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆24Updated last month
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• obi-ontology / obi
  The Ontology for Biomedical Investigations
  ☆85Updated this week
• OBOFoundry / OBOFoundry.github.io
  Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
  ☆179Updated last week