callahantiff / PheKnowLator
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
☆168Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for PheKnowLator
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆84Updated last year
- Schema and generated objects for biolink data model and upper ontology☆177Updated last week
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆80Updated last year
- KGX is a Python library for exchanging Knowledge Graphs☆116Updated 3 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated this week
- PhenoTagger☆54Updated 9 months ago
- TypeDB Bio: Biomedical Knowledge Graph☆78Updated 5 months ago
- NetworkX-based Python library for representing ontologies☆82Updated last year
- python library for working with ontologies and ontology associations☆123Updated last week
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆61Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆50Updated 2 weeks ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆36Updated 5 months ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆38Updated this week
- ☆126Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated this week
- a module to calculate the MeSH similarity☆24Updated 2 years ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆95Updated this week
- Medical action ontology☆52Updated 2 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated 8 months ago
- Mondo Disease Ontology☆237Updated this week
- Build PharMeBINet from different sources.☆12Updated this week
- LLM-driven curation assist tool☆70Updated this week
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 3 weeks ago
- NCATS Biomedical Translator Reasoners Standard API☆35Updated last month
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆19Updated 2 weeks ago
- ☆63Updated 2 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆76Updated 3 weeks ago
- A resource of adverse drug effects extracted from FDA structured product labels☆63Updated last month
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆445Updated last year