callahantiff / PheKnowLator
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
☆180Updated 9 months ago
Alternatives and similar repositories for PheKnowLator:
Users that are interested in PheKnowLator are comparing it to the libraries listed below
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆86Updated last year
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆80Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated last week
- KGX is a Python library for exchanging Knowledge Graphs☆117Updated last month
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆51Updated last week
- Mondo Disease Ontology☆240Updated this week
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆62Updated this week
- NetworkX-based Python library for representing ontologies☆84Updated last year
- ☆128Updated 2 years ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆40Updated last week
- Schema and generated objects for biolink data model and upper ontology☆184Updated 2 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated 11 months ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆39Updated 8 months ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆131Updated last week
- Monarch Initiative website and API☆20Updated this week
- python library for working with ontologies and ontology associations☆124Updated last week
- TypeDB Bio: Biomedical Knowledge Graph☆82Updated 8 months ago
- mOWL: Machine Learning library with Ontologies☆63Updated 3 weeks ago
- Build PharMeBINet from different sources.☆14Updated this week
- Data transformation framework for LinkML data models☆48Updated last month
- PhenoTagger☆55Updated last year
- Medical action ontology☆55Updated last month
- Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)☆54Updated this week
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆105Updated 2 weeks ago
- Github repo for the Experimental Factor Ontology (EFO)☆58Updated this week
- Data ingest application for Monarch Initiative knowledge graph using Koza☆15Updated this week
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆13Updated 3 months ago
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆466Updated 2 years ago
- Ontology Lookup Service from SPOT at EBI☆98Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆78Updated last month