gyorilab / indra_dbLinks
A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.
☆17Updated last week
Alternatives and similar repositories for indra_db
Users that are interested in indra_db are comparing it to the libraries listed below
Sorting:
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆69Updated this week
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆42Updated 2 weeks ago
- ☆24Updated 4 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆54Updated last month
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- Monarch Initiative website and API☆24Updated this week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 weeks ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆29Updated 5 years ago
- Python library for working with BioC files☆13Updated 7 years ago
- Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)☆10Updated last month
- a tool for mapping free-text descriptions of entities to ontology terms☆21Updated 10 months ago
- ☆15Updated 3 weeks ago
- NetworkX-based Python library for representing ontologies☆90Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week
- Integrated OBO ontology store☆46Updated 3 weeks ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated this week
- TypeDB Bio: Biomedical Knowledge Graph☆86Updated 11 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- ☆18Updated 10 months ago
- Basic and Advanced OBO Graphs: specification and reference implementation☆64Updated 5 months ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆41Updated last month
- Web-component for creating & showing VSM-sentences — Visual Syntax Method☆30Updated 4 years ago
- wrapper for multiple linkml storage engines☆21Updated 2 weeks ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated last week
- Code that parses datasets from various sources and converts them to load graph databases.☆16Updated this week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- NCATS Biomedical Translator Reasoners Standard API☆36Updated this week