gyorilab / indra_dbLinks
A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.
☆17Updated last week
Alternatives and similar repositories for indra_db
Users that are interested in indra_db are comparing it to the libraries listed below
Sorting:
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆69Updated last week
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆43Updated last week
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 5 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆55Updated this week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated this week
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆29Updated 5 years ago
- A stitching platform for InXight☆15Updated 2 months ago
- Integrated OBO ontology store☆47Updated last month
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week
- ☆24Updated 4 years ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated 3 weeks ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- ☆15Updated this week
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆42Updated this week
- Monarch Initiative website and API☆26Updated this week
- Grounding of biomedical named entities with contextual disambiguation☆44Updated last month
- a tool for mapping free-text descriptions of entities to ontology terms☆20Updated 10 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- Basic and Advanced OBO Graphs: specification and reference implementation☆64Updated 6 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- wrapper for multiple linkml storage engines☆21Updated last week
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated this week
- TypeDB Bio: Biomedical Knowledge Graph☆86Updated 3 weeks ago
- LLM-driven curation assist tool☆90Updated last week
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆64Updated last month
- HiView: the universal viewer for hierarchical data☆16Updated 2 years ago
- NCATS Biomedical Translator Reasoners Standard API☆37Updated 2 weeks ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated last month
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 3 months ago