A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.
☆18Feb 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for indra_db
Users that are interested in indra_db are comparing it to the libraries listed below
Sorting:
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆205Feb 23, 2026Updated last week
- Tool for disambiguating acronyms and abbreviations in text for NLP applications☆22Dec 18, 2025Updated 2 months ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated 11 months ago
- HiView: the universal viewer for hierarchical data☆16Mar 23, 2023Updated 2 years ago
- Python package for working with PEtab files☆16Feb 4, 2026Updated last month
- The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology (DIDEO)☆15Oct 25, 2023Updated 2 years ago
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆25Jan 14, 2026Updated last month
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 5 months ago
- JSON-LD Contexts for Bioinformatics Data☆23Mar 25, 2024Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆49Feb 13, 2026Updated 3 weeks ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Updated this week
- Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes☆26Jan 14, 2026Updated last month
- Python client for the Open Targets REST API at targetvalidation.org☆26Aug 22, 2025Updated 6 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆62Feb 27, 2026Updated last week
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Feb 26, 2026Updated last week
- Code base for the practitioner's guide to the ONC algorithm paper published with the Journal of Financial Data Science☆20Jun 8, 2023Updated 2 years ago
- exemplar code to download all option chains for a symbol using pyetrade (V1 Etrade API)☆10Sep 28, 2021Updated 4 years ago
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…☆11Jul 25, 2025Updated 7 months ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Updated this week
- NetworkX-based Python library for representing ontologies☆94Jul 12, 2023Updated 2 years ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆46Jan 26, 2026Updated last month
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆40Sep 29, 2025Updated 5 months ago
- 🍪 A cookiecutter package for an enlightened python package☆41Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- Collation of metadata examples and notes for the project☆11Jan 30, 2026Updated last month
- Connectome File Format Library for Multi-Modal Neuroimaging Data and Metadata☆13Jan 14, 2019Updated 7 years ago
- Curated list of yield farms and tools 🤑☆12Jul 15, 2021Updated 4 years ago
- This github repository hosts the code used within my thesis work and my last publication.☆12Jul 20, 2017Updated 8 years ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated last month
- Trade equities with python algorithms.☆15Apr 8, 2024Updated last year
- List of awesome web3 resources☆12Oct 12, 2021Updated 4 years ago
- JIRA OSLC plugin is a JIRA add-on. Main role of this plugin is extend JIRA functionalities to provide establishing and removing OSLC link…☆10Aug 29, 2017Updated 8 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated last year
- Simple Standard for Sharing Ontology Mappings☆186Feb 26, 2026Updated last week
- Integrated OBO ontology store☆48Feb 13, 2026Updated 3 weeks ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆56Updated this week