MannLabs / CKGLinks
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
☆511Updated 2 years ago
Alternatives and similar repositories for CKG
Users that are interested in CKG are comparing it to the libraries listed below
Sorting:
- Precision Medicine Knowledge Graph (PrimeKG)☆604Updated last year
- A curated list of biomedical knowledge graphs and of resources for their construction.☆55Updated 10 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- Hetionet: an integrative network of disease☆298Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆193Updated last year
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆236Updated 3 months ago
- A unifying framework for biomedical research knowledge graphs☆261Updated 2 weeks ago
- Repository for the Human Disease Ontology.☆373Updated this week
- A knowledge graph and a set of tools for drug repurposing☆648Updated 3 years ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆67Updated last week
- Build PharMeBINet from different sources.☆19Updated last week
- ☆69Updated 3 years ago
- ☆28Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆105Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆46Updated last week
- AIONER☆59Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆118Updated 3 years ago
- Mondo Disease Ontology☆264Updated this week
- ☆131Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆89Updated last year
- The Clinical Trials Knowledge Graph☆59Updated 2 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆122Updated last week
- TypeDB Bio: Biomedical Knowledge Graph☆85Updated 2 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆69Updated this week
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆70Updated last month
- Code and data for TrialGPT.☆120Updated 7 months ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆220Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆152Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆200Updated last year