gnn4dr / DRKG
A knowledge graph and a set of tools for drug repurposing
☆624Updated 2 years ago
Alternatives and similar repositories for DRKG:
Users that are interested in DRKG are comparing it to the libraries listed below
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆150Updated 11 months ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆223Updated 2 weeks ago
- Hetionet: an integrative network of disease☆281Updated 2 years ago
- Python package for graph neural networks in chemistry and biology☆750Updated last year
- Precision Medicine Knowledge Graph (PrimeKG)☆524Updated 10 months ago
- Graph convolutional neural network for multirelational link prediction☆457Updated 2 years ago
- Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bi…☆226Updated 5 years ago
- Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science☆1,080Updated this week
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆476Updated 2 years ago
- Strategies for Pre-training Graph Neural Networks☆1,000Updated last year
- A Knowledge Graph for Relational Learning On Biological Data☆95Updated last year
- High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.☆1,297Updated last year
- A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)☆1,032Updated 10 months ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆195Updated 11 months ago
- ☆215Updated 2 years ago
- [IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models☆521Updated last year
- Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network☆90Updated 5 years ago
- Tutorials for Machine Learning on Graphs☆220Updated 3 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆85Updated 8 months ago
- User-friendly extensions of the DrugBank database☆185Updated 5 years ago
- Inductive relation prediction by subgraph reasoning, ICML'20☆238Updated 8 months ago
- This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data☆344Updated 2 years ago
- A Network Integration Approach for Drug-Target Interaction Prediction☆180Updated 2 years ago
- Source Code for IJCAI'20 "KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction"☆88Updated 4 years ago
- Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)☆208Updated last year
- ☆63Updated 5 years ago
- Subgraph Neural Networks (NeurIPS 2020)☆193Updated 4 years ago
- ☆55Updated 4 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆110Updated 3 years ago
- The Clinical Trials Knowledge Graph☆57Updated 2 years ago