🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
☆61Mar 2, 2026Updated this week
Alternatives and similar repositories for biomappings
Users that are interested in biomappings are comparing it to the libraries listed below
Sorting:
- Grounding of biomedical named entities with contextual disambiguation☆49Feb 13, 2026Updated 3 weeks ago
- Python toolkit for SSSOM mapping format☆60Feb 20, 2026Updated 2 weeks ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆140Feb 27, 2026Updated last week
- Integrated OBO ontology store☆48Feb 13, 2026Updated 3 weeks ago
- 🪝 What's the latest version for each database?☆28Updated this week
- Simple Standard for Sharing Ontology Mappings☆186Feb 26, 2026Updated last week
- Mondo Disease Ontology☆291Feb 28, 2026Updated last week
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆25Jan 14, 2026Updated last month
- Materialize OWL existential relations☆20Nov 12, 2025Updated 3 months ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 3 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Feb 26, 2026Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Mar 19, 2024Updated last year
- Schema and generated objects for biolink data model and upper ontology☆224Feb 25, 2026Updated last week
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 5 months ago
- Network Embedding All the Things☆18Oct 4, 2022Updated 3 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Feb 27, 2026Updated last week
- 👜 Easily pick a place to store data for your Python code.☆42Feb 19, 2026Updated 2 weeks ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆159Feb 20, 2026Updated 2 weeks ago
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 2 months ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆116Feb 13, 2026Updated 3 weeks ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated last year
- KGX is a Python library for exchanging Knowledge Graphs☆139Feb 5, 2026Updated last month
- source files for OBA (Ontology of Biological Attributes)☆28Jan 21, 2026Updated last month
- ☆15Updated this week
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆69Nov 7, 2025Updated 4 months ago
- The Ontology for Biomedical Investigations☆100Feb 27, 2026Updated last week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Feb 25, 2026Updated last week
- Data ingest application for Monarch Initiative knowledge graph using Koza☆21Feb 10, 2026Updated 3 weeks ago
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…☆11Dec 24, 2024Updated last year
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Jul 1, 2024Updated last year
- a tool for mapping free-text descriptions of entities to ontology terms☆24Jul 30, 2024Updated last year
- Repository for representing genotypes and their association with phenotypes☆20Feb 2, 2026Updated last month
- Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.☆12Jun 26, 2024Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 2 years ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- Ontology lifecycle management☆301Feb 21, 2026Updated 2 weeks ago
- ☆58Nov 15, 2020Updated 5 years ago