Alternatives and similar repositories for biomappings

Users that are interested in biomappings are comparing it to the libraries listed below

• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆138Updated this week
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆62Updated last week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆20Updated last week
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆74Updated this week
• OntoGene / OGER
  ☆24Updated 5 years ago
• NCATSTranslator / Babel
  Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
  ☆12Updated this week
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆42Updated this week
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 3 years ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆82Updated 3 weeks ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 8 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated this week
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 5 months ago
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆218Updated this week
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 4 months ago
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆133Updated 10 months ago
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆26Updated 3 months ago
• monarch-initiative / embiggen
  🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
  ☆42Updated 2 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 5 months ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆197Updated last year
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated last week
• EBISPOT / ols4
  The EMBL-EBI Ontology Lookup Service (OLS)
  ☆75Updated this week
• monarch-initiative / vertebrate-breed-ontology
  ☆14Updated last week
• obophenotype / bio-attribute-ontology
  source files for OBA (Ontology of Biological Attributes)
  ☆27Updated last week
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated last year
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆30Updated last week
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆45Updated last week
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated last week
• monarch-initiative / monarch-ingest
  Data ingest application for Monarch Initiative knowledge graph using Koza
  ☆20Updated this week