biopragmatics / biomappingsLinks
šŗļø Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
ā56Updated last week
Alternatives and similar repositories for biomappings
Users that are interested in biomappings are comparing it to the libraries listed below
Sorting:
- š® An integrative registry of biological databases, ontologies, and nomenclatures.ā132Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubā32Updated last year
- š A Python package for using ontologies, terminologies, and biomedical nomenclaturesā70Updated last week
- Github repo for the Experimental Factor Ontology (EFO)ā58Updated last week
- ā24Updated 4 years ago
- A stitching platform for InXightā15Updated 3 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.ā16Updated 2 weeks ago
- Ontology cross-reference and mapping serviceā19Updated 2 months ago
- šŖ What's the latest version for each database?ā27Updated this week
- Data Ingestion Pipeline for Monarchā57Updated 2 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)ā36Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.ā79Updated last month
- Draft cell type definitions from data - candidates for inclusion in CLā12Updated last week
- Schema and generated objects for biolink data model and upper ontologyā199Updated this week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.ā13Updated last month
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cā¦ā50Updated 3 weeks ago
- API for linked biological knowledgeā64Updated 3 years ago
- ā12Updated 5 months ago
- ā15Updated 3 weeks ago
- python library for working with ontologies and ontology associationsā129Updated 5 months ago
- Communitiy-based Cell Line Ontologyā18Updated last year
- š Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.ā42Updated last year
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginā12Updated 3 months ago
- ā19Updated last week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.ā24Updated last week
- Build for NCBITaxonā29Updated 3 months ago
- KGX is a Python library for exchanging Knowledge Graphsā129Updated 2 weeks ago
- Map your disease and phenotype terms to the Open Targets platform ontologyā21Updated 3 weeks ago
- Summary Dashboard for Open Biological and Biomedical Ontologiesā23Updated 2 weeks ago
- PATO - the Phenotype And Trait Ontologyā59Updated 2 weeks ago