Alternatives and similar repositories for biomappings:

Users that are interested in biomappings are comparing it to the libraries listed below

• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆63Updated this week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆18Updated 9 months ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆57Updated this week
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆122Updated this week
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆13Updated last year
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 3 months ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆33Updated this week
• OntoGene / OGER
  ☆24Updated 4 years ago
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated 8 months ago
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated 9 months ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last month
• ncats / stitcher
  A stitching platform for InXight
  ☆16Updated 2 weeks ago
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆22Updated 3 weeks ago
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated this week
• monarch-initiative / oai-monarch-plugin
  First pass at a thin wrapper around the Monarch API and ChatGPT plugin
  ☆13Updated 3 weeks ago
• obophenotype / bio-attribute-ontology
  source files for OBA (Ontology of Biological Attributes)
  ☆27Updated 2 weeks ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated 4 months ago
• monarch-initiative / monarch-ingest
  Data ingest application for Monarch Initiative knowledge graph using Koza
  ☆16Updated this week
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆27Updated 3 weeks ago
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆31Updated this week
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆128Updated 2 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆80Updated last week
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 3 months ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆192Updated this week
• obophenotype / cell-ontology
  An ontology of cell types
  ☆168Updated this week
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated 2 weeks ago