biopragmatics / biomappingsLinks
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
☆57Updated 2 weeks ago
Alternatives and similar repositories for biomappings
Users that are interested in biomappings are comparing it to the libraries listed below
Sorting:
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆138Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated this week
- Ontology cross-reference and mapping service☆20Updated last month
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆74Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆82Updated last month
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆12Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated this week
- A stitching platform for InXight☆15Updated 9 months ago
- ☆24Updated 5 years ago
- python library for working with ontologies and ontology associations☆133Updated 11 months ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆13Updated 5 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆197Updated last year
- 🪝 What's the latest version for each database?☆28Updated this week
- Schema and generated objects for biolink data model and upper ontology☆220Updated last week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last week
- A system for managing OBO PURLs☆86Updated this week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 6 months ago
- An ontology of cell types☆186Updated this week
- Data Ingestion Pipeline for Monarch☆57Updated 3 years ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆26Updated 3 months ago
- API for linked biological knowledge☆66Updated 3 years ago
- Build for NCBITaxon☆30Updated last month
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 6 months ago
- Communitiy-based Cell Line Ontology☆18Updated last year
- source files for OBA (Ontology of Biological Attributes)☆27Updated last week
- ☆15Updated 3 weeks ago
- 🎡 Unified access to OLS instances like from the EBI and TIB☆13Updated last week
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆27Updated 4 months ago
- The EMBL-EBI Ontology Lookup Service (OLS)☆76Updated this week